nsv3112146
- Organism: Homo sapiens
- Study:nstd145 (Lu et al. 2017)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:GRCh37 (hg19)
- Variant Calls:37
- Validation:Not tested
- Clinical Assertions: No
- Region Size:6,342
- Publication(s):Lu et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 212 SVs from 60 studies. See in: genome view
Overlapping variant regions from other studies: 212 SVs from 60 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3112146 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nsv3112146 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14090060 | deletion | sample36 | Oligo aCGH | Probe signal intensity | 48 |
| nssv14090221 | deletion | sample386 | Oligo aCGH | Probe signal intensity | 86 |
| nssv14090291 | deletion | sample411 | Oligo aCGH | Probe signal intensity | 70 |
| nssv14090881 | deletion | sample83 | Oligo aCGH | Probe signal intensity | 88 |
| nssv14090900 | deletion | sample89 | Oligo aCGH | Probe signal intensity | 102 |
| nssv14090933 | deletion | sample100 | Oligo aCGH | Probe signal intensity | 75 |
| nssv14090955 | deletion | sample110 | Oligo aCGH | Probe signal intensity | 72 |
| nssv14090970 | deletion | sample113 | Oligo aCGH | Probe signal intensity | 90 |
| nssv14090991 | deletion | sample119 | Oligo aCGH | Probe signal intensity | 87 |
| nssv14091031 | deletion | sample135 | Oligo aCGH | Probe signal intensity | 51 |
| nssv14091077 | deletion | sample43 | Oligo aCGH | Probe signal intensity | 92 |
| nssv14091113 | deletion | sample55 | Oligo aCGH | Probe signal intensity | 59 |
| nssv14091149 | deletion | sample68 | Oligo aCGH | Probe signal intensity | 72 |
| nssv14091162 | deletion | sample73 | Oligo aCGH | Probe signal intensity | 73 |
| nssv14091170 | deletion | sample78 | Oligo aCGH | Probe signal intensity | 91 |
| nssv14091714 | deletion | sample153 | Oligo aCGH | Probe signal intensity | 68 |
| nssv14091725 | deletion | sample157 | Oligo aCGH | Probe signal intensity | 85 |
| nssv14091771 | deletion | sample176 | Oligo aCGH | Probe signal intensity | 67 |
| nssv14091780 | deletion | sample178 | Oligo aCGH | Probe signal intensity | 77 |
| nssv14091819 | deletion | sample191 | Oligo aCGH | Probe signal intensity | 68 |
| nssv14091849 | deletion | sample206 | Oligo aCGH | Probe signal intensity | 96 |
| nssv14091854 | deletion | sample208 | Oligo aCGH | Probe signal intensity | 111 |
| nssv14091860 | deletion | sample211 | Oligo aCGH | Probe signal intensity | 71 |
| nssv14091883 | deletion | sample226 | Oligo aCGH | Probe signal intensity | 68 |
| nssv14091887 | deletion | sample227 | Oligo aCGH | Probe signal intensity | 75 |
| nssv14091918 | deletion | sample237 | Oligo aCGH | Probe signal intensity | 62 |
| nssv14091921 | deletion | sample239 | Oligo aCGH | Probe signal intensity | 46 |
| nssv14091943 | deletion | sample245 | Oligo aCGH | Probe signal intensity | 89 |
| nssv14091953 | deletion | sample251 | Oligo aCGH | Probe signal intensity | 35 |
| nssv14091958 | deletion | sample253 | Oligo aCGH | Probe signal intensity | 90 |
| nssv14091995 | deletion | sample268 | Oligo aCGH | Probe signal intensity | 85 |
| nssv14093013 | deletion | sample275 | Oligo aCGH | Probe signal intensity | 94 |
| nssv14093100 | deletion | sample308 | Oligo aCGH | Probe signal intensity | 60 |
| nssv14093155 | deletion | sample326 | Oligo aCGH | Probe signal intensity | 49 |
| nssv14093159 | deletion | sample328 | Oligo aCGH | Probe signal intensity | 70 |
| nssv14093210 | deletion | sample358 | Oligo aCGH | Probe signal intensity | 77 |
| nssv14093251 | deletion | sample370 | Oligo aCGH | Probe signal intensity | 44 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14090060 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14090221 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14090291 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14090881 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14090900 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14090933 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14090955 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14090970 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14090991 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14091031 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14091077 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14091113 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14091149 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14091162 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14091170 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14091714 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14091725 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14091771 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14091780 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14091819 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14091849 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14091854 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14091860 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14091883 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14091887 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14091918 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14091921 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14091943 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14091953 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14091958 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14091995 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14093013 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14093100 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14093155 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14093159 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14093210 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14093251 | Remapped | Perfect | NC_000011.10:g.(?_ 93962070)_(9396841 1_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 93,962,070 | 93,968,411 |
| nssv14090060 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14090221 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14090291 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14090881 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14090900 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14090933 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14090955 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14090970 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14090991 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14091031 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14091077 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14091113 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14091149 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14091162 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14091170 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14091714 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14091725 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14091771 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14091780 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14091819 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14091849 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14091854 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14091860 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14091883 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14091887 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14091918 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14091921 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14091943 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14091953 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14091958 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14091995 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14093013 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14093100 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14093155 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14093159 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14093210 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 | ||
| nssv14093251 | Submitted genomic | NC_000011.9:g.(?_9 3695236)_(93701577 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 93,695,236 | 93,701,577 |