nsv3112484
- Organism: Homo sapiens
- Study:nstd145 (Lu et al. 2017)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:GRCh37 (hg19)
- Variant Calls:10
- Validation:Not tested
- Clinical Assertions: No
- Region Size:8,832
- Publication(s):Lu et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1762 SVs from 87 studies. See in: genome view
Overlapping variant regions from other studies: 1769 SVs from 87 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3112484 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 55,667,071 | 55,675,902 |
| nsv3112484 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000011.9 | Chr11 | 55,434,547 | 55,443,378 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14089973 | deletion | sample5 | Oligo aCGH | Probe signal intensity | 69 |
| nssv14090049 | deletion | sample34 | Oligo aCGH | Probe signal intensity | 71 |
| nssv14090908 | deletion | sample90 | Oligo aCGH | Probe signal intensity | 91 |
| nssv14091803 | deletion | sample186 | Oligo aCGH | Probe signal intensity | 82 |
| nssv14091862 | deletion | sample213 | Oligo aCGH | Probe signal intensity | 61 |
| nssv14091924 | deletion | sample241 | Oligo aCGH | Probe signal intensity | 59 |
| nssv14093018 | deletion | sample277 | Oligo aCGH | Probe signal intensity | 42 |
| nssv14093035 | deletion | sample282 | Oligo aCGH | Probe signal intensity | 85 |
| nssv14093127 | deletion | sample318 | Oligo aCGH | Probe signal intensity | 88 |
| nssv14093134 | deletion | sample320 | Oligo aCGH | Probe signal intensity | 63 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14089973 | Remapped | Perfect | NC_000011.10:g.(?_ 55667071)_(5567590 2_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,667,071 | 55,675,902 |
| nssv14090049 | Remapped | Perfect | NC_000011.10:g.(?_ 55667071)_(5567590 2_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,667,071 | 55,675,902 |
| nssv14090908 | Remapped | Perfect | NC_000011.10:g.(?_ 55667071)_(5567590 2_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,667,071 | 55,675,902 |
| nssv14091803 | Remapped | Perfect | NC_000011.10:g.(?_ 55667071)_(5567590 2_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,667,071 | 55,675,902 |
| nssv14091862 | Remapped | Perfect | NC_000011.10:g.(?_ 55667071)_(5567590 2_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,667,071 | 55,675,902 |
| nssv14091924 | Remapped | Perfect | NC_000011.10:g.(?_ 55667071)_(5567590 2_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,667,071 | 55,675,902 |
| nssv14093018 | Remapped | Perfect | NC_000011.10:g.(?_ 55667071)_(5567590 2_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,667,071 | 55,675,902 |
| nssv14093035 | Remapped | Perfect | NC_000011.10:g.(?_ 55667071)_(5567590 2_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,667,071 | 55,675,902 |
| nssv14093127 | Remapped | Perfect | NC_000011.10:g.(?_ 55667071)_(5567590 2_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,667,071 | 55,675,902 |
| nssv14093134 | Remapped | Perfect | NC_000011.10:g.(?_ 55667071)_(5567590 2_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 55,667,071 | 55,675,902 |
| nssv14089973 | Submitted genomic | NC_000011.9:g.(?_5 5434547)_(55443378 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,434,547 | 55,443,378 | ||
| nssv14090049 | Submitted genomic | NC_000011.9:g.(?_5 5434547)_(55443378 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,434,547 | 55,443,378 | ||
| nssv14090908 | Submitted genomic | NC_000011.9:g.(?_5 5434547)_(55443378 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,434,547 | 55,443,378 | ||
| nssv14091803 | Submitted genomic | NC_000011.9:g.(?_5 5434547)_(55443378 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,434,547 | 55,443,378 | ||
| nssv14091862 | Submitted genomic | NC_000011.9:g.(?_5 5434547)_(55443378 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,434,547 | 55,443,378 | ||
| nssv14091924 | Submitted genomic | NC_000011.9:g.(?_5 5434547)_(55443378 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,434,547 | 55,443,378 | ||
| nssv14093018 | Submitted genomic | NC_000011.9:g.(?_5 5434547)_(55443378 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,434,547 | 55,443,378 | ||
| nssv14093035 | Submitted genomic | NC_000011.9:g.(?_5 5434547)_(55443378 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,434,547 | 55,443,378 | ||
| nssv14093127 | Submitted genomic | NC_000011.9:g.(?_5 5434547)_(55443378 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,434,547 | 55,443,378 | ||
| nssv14093134 | Submitted genomic | NC_000011.9:g.(?_5 5434547)_(55443378 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 55,434,547 | 55,443,378 |