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dbVar

Database of genomic structural variation

nsv3112646

Organism: Homo sapiens

Study:nstd145 (Lu et al. 2017)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:23,375

Publication(s):Lu et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 264 SVs from 49 studies. See in: genome view

Remapped(Score: Perfect):114,614,346-114,637,720

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3112646	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	114,614,346	114,637,720
nsv3112646	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	113,950,043	113,973,417

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14096742	deletion	sample25	Oligo aCGH	Probe signal intensity	82
nssv14097353	deletion	sample97	Oligo aCGH	Probe signal intensity	80
nssv14109144	deletion	sample253	Oligo aCGH	Probe signal intensity	90

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14096742	Remapped	Perfect	NC_000005.10:g.(?_ 114614346)_(114637 720_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	114,614,346	114,637,720
nssv14097353	Remapped	Perfect	NC_000005.10:g.(?_ 114614346)_(114637 720_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	114,614,346	114,637,720
nssv14109144	Remapped	Perfect	NC_000005.10:g.(?_ 114614346)_(114637 720_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	114,614,346	114,637,720
nssv14096742	Submitted genomic		NC_000005.9:g.(?_1 13950043)_(1139734 17_?)del	GRCh37 (hg19)		NC_000005.9	Chr5	113,950,043	113,973,417
nssv14097353	Submitted genomic		NC_000005.9:g.(?_1 13950043)_(1139734 17_?)del	GRCh37 (hg19)		NC_000005.9	Chr5	113,950,043	113,973,417
nssv14109144	Submitted genomic		NC_000005.9:g.(?_1 13950043)_(1139734 17_?)del	GRCh37 (hg19)		NC_000005.9	Chr5	113,950,043	113,973,417

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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