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dbVar

Database of genomic structural variation

nsv3112869

Organism: Homo sapiens

Study:nstd145 (Lu et al. 2017)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:5,679

Publication(s):Lu et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 181 SVs from 36 studies. See in: genome view

Remapped(Score: Perfect):195,416,466-195,422,144

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3112869	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	195,416,466	195,422,144
nsv3112869	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000003.11	Chr3	195,137,195	195,142,873

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14105342	deletion	sample102	Oligo aCGH	Probe signal intensity	95
nssv14106677	deletion	sample187	Oligo aCGH	Probe signal intensity	58

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14105342	Remapped	Perfect	NC_000003.12:g.(?_ 195416466)_(195422 144_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	195,416,466	195,422,144
nssv14106677	Remapped	Perfect	NC_000003.12:g.(?_ 195416466)_(195422 144_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	195,416,466	195,422,144
nssv14105342	Submitted genomic		NC_000003.11:g.(?_ 195137195)_(195142 873_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	195,137,195	195,142,873
nssv14106677	Submitted genomic		NC_000003.11:g.(?_ 195137195)_(195142 873_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	195,137,195	195,142,873

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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