nsv3113172
- Organism: Homo sapiens
- Study:nstd145 (Lu et al. 2017)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:GRCh37 (hg19)
- Variant Calls:17
- Validation:Not tested
- Clinical Assertions: No
- Region Size:4,711
- Publication(s):Lu et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 160 SVs from 51 studies. See in: genome view
Overlapping variant regions from other studies: 160 SVs from 51 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3113172 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000007.14 | Chr7 | 112,875,017 | 112,879,727 |
| nsv3113172 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000007.13 | Chr7 | 112,515,072 | 112,519,782 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14083213 | deletion | sample61 | Oligo aCGH | Probe signal intensity | 81 |
| nssv14083354 | deletion | sample90 | Oligo aCGH | Probe signal intensity | 91 |
| nssv14083360 | deletion | sample91 | Oligo aCGH | Probe signal intensity | 90 |
| nssv14083411 | deletion | sample99 | Oligo aCGH | Probe signal intensity | 74 |
| nssv14084051 | deletion | sample11 | Oligo aCGH | Probe signal intensity | 90 |
| nssv14084196 | deletion | sample129 | Oligo aCGH | Probe signal intensity | 70 |
| nssv14084240 | deletion | sample138 | Oligo aCGH | Probe signal intensity | 112 |
| nssv14084252 | deletion | sample140 | Oligo aCGH | Probe signal intensity | 85 |
| nssv14084374 | deletion | sample162 | Oligo aCGH | Probe signal intensity | 86 |
| nssv14084849 | deletion | sample47 | Oligo aCGH | Probe signal intensity | 77 |
| nssv14085133 | deletion | sample189 | Oligo aCGH | Probe signal intensity | 59 |
| nssv14085141 | deletion | sample190 | Oligo aCGH | Probe signal intensity | 77 |
| nssv14085356 | deletion | sample237 | Oligo aCGH | Probe signal intensity | 62 |
| nssv14085419 | deletion | sample251 | Oligo aCGH | Probe signal intensity | 35 |
| nssv14085671 | deletion | sample411 | Oligo aCGH | Probe signal intensity | 70 |
| nssv14085683 | deletion | sample413 | Oligo aCGH | Probe signal intensity | 65 |
| nssv14086663 | deletion | sample324 | Oligo aCGH | Probe signal intensity | 54 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14083213 | Remapped | Perfect | NC_000007.14:g.(?_ 112875017)_(112879 727_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 112,875,017 | 112,879,727 |
| nssv14083354 | Remapped | Perfect | NC_000007.14:g.(?_ 112875017)_(112879 727_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 112,875,017 | 112,879,727 |
| nssv14083360 | Remapped | Perfect | NC_000007.14:g.(?_ 112875017)_(112879 727_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 112,875,017 | 112,879,727 |
| nssv14083411 | Remapped | Perfect | NC_000007.14:g.(?_ 112875017)_(112879 727_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 112,875,017 | 112,879,727 |
| nssv14084051 | Remapped | Perfect | NC_000007.14:g.(?_ 112875017)_(112879 727_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 112,875,017 | 112,879,727 |
| nssv14084196 | Remapped | Perfect | NC_000007.14:g.(?_ 112875017)_(112879 727_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 112,875,017 | 112,879,727 |
| nssv14084240 | Remapped | Perfect | NC_000007.14:g.(?_ 112875017)_(112879 727_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 112,875,017 | 112,879,727 |
| nssv14084252 | Remapped | Perfect | NC_000007.14:g.(?_ 112875017)_(112879 727_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 112,875,017 | 112,879,727 |
| nssv14084374 | Remapped | Perfect | NC_000007.14:g.(?_ 112875017)_(112879 727_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 112,875,017 | 112,879,727 |
| nssv14084849 | Remapped | Perfect | NC_000007.14:g.(?_ 112875017)_(112879 727_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 112,875,017 | 112,879,727 |
| nssv14085133 | Remapped | Perfect | NC_000007.14:g.(?_ 112875017)_(112879 727_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 112,875,017 | 112,879,727 |
| nssv14085141 | Remapped | Perfect | NC_000007.14:g.(?_ 112875017)_(112879 727_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 112,875,017 | 112,879,727 |
| nssv14085356 | Remapped | Perfect | NC_000007.14:g.(?_ 112875017)_(112879 727_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 112,875,017 | 112,879,727 |
| nssv14085419 | Remapped | Perfect | NC_000007.14:g.(?_ 112875017)_(112879 727_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 112,875,017 | 112,879,727 |
| nssv14085671 | Remapped | Perfect | NC_000007.14:g.(?_ 112875017)_(112879 727_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 112,875,017 | 112,879,727 |
| nssv14085683 | Remapped | Perfect | NC_000007.14:g.(?_ 112875017)_(112879 727_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 112,875,017 | 112,879,727 |
| nssv14086663 | Remapped | Perfect | NC_000007.14:g.(?_ 112875017)_(112879 727_?)del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 112,875,017 | 112,879,727 |
| nssv14083213 | Submitted genomic | NC_000007.13:g.(?_ 112515072)_(112519 782_?)del | GRCh37 (hg19) | NC_000007.13 | Chr7 | 112,515,072 | 112,519,782 | ||
| nssv14083354 | Submitted genomic | NC_000007.13:g.(?_ 112515072)_(112519 782_?)del | GRCh37 (hg19) | NC_000007.13 | Chr7 | 112,515,072 | 112,519,782 | ||
| nssv14083360 | Submitted genomic | NC_000007.13:g.(?_ 112515072)_(112519 782_?)del | GRCh37 (hg19) | NC_000007.13 | Chr7 | 112,515,072 | 112,519,782 | ||
| nssv14083411 | Submitted genomic | NC_000007.13:g.(?_ 112515072)_(112519 782_?)del | GRCh37 (hg19) | NC_000007.13 | Chr7 | 112,515,072 | 112,519,782 | ||
| nssv14084051 | Submitted genomic | NC_000007.13:g.(?_ 112515072)_(112519 782_?)del | GRCh37 (hg19) | NC_000007.13 | Chr7 | 112,515,072 | 112,519,782 | ||
| nssv14084196 | Submitted genomic | NC_000007.13:g.(?_ 112515072)_(112519 782_?)del | GRCh37 (hg19) | NC_000007.13 | Chr7 | 112,515,072 | 112,519,782 | ||
| nssv14084240 | Submitted genomic | NC_000007.13:g.(?_ 112515072)_(112519 782_?)del | GRCh37 (hg19) | NC_000007.13 | Chr7 | 112,515,072 | 112,519,782 | ||
| nssv14084252 | Submitted genomic | NC_000007.13:g.(?_ 112515072)_(112519 782_?)del | GRCh37 (hg19) | NC_000007.13 | Chr7 | 112,515,072 | 112,519,782 | ||
| nssv14084374 | Submitted genomic | NC_000007.13:g.(?_ 112515072)_(112519 782_?)del | GRCh37 (hg19) | NC_000007.13 | Chr7 | 112,515,072 | 112,519,782 | ||
| nssv14084849 | Submitted genomic | NC_000007.13:g.(?_ 112515072)_(112519 782_?)del | GRCh37 (hg19) | NC_000007.13 | Chr7 | 112,515,072 | 112,519,782 | ||
| nssv14085133 | Submitted genomic | NC_000007.13:g.(?_ 112515072)_(112519 782_?)del | GRCh37 (hg19) | NC_000007.13 | Chr7 | 112,515,072 | 112,519,782 | ||
| nssv14085141 | Submitted genomic | NC_000007.13:g.(?_ 112515072)_(112519 782_?)del | GRCh37 (hg19) | NC_000007.13 | Chr7 | 112,515,072 | 112,519,782 | ||
| nssv14085356 | Submitted genomic | NC_000007.13:g.(?_ 112515072)_(112519 782_?)del | GRCh37 (hg19) | NC_000007.13 | Chr7 | 112,515,072 | 112,519,782 | ||
| nssv14085419 | Submitted genomic | NC_000007.13:g.(?_ 112515072)_(112519 782_?)del | GRCh37 (hg19) | NC_000007.13 | Chr7 | 112,515,072 | 112,519,782 | ||
| nssv14085671 | Submitted genomic | NC_000007.13:g.(?_ 112515072)_(112519 782_?)del | GRCh37 (hg19) | NC_000007.13 | Chr7 | 112,515,072 | 112,519,782 | ||
| nssv14085683 | Submitted genomic | NC_000007.13:g.(?_ 112515072)_(112519 782_?)del | GRCh37 (hg19) | NC_000007.13 | Chr7 | 112,515,072 | 112,519,782 | ||
| nssv14086663 | Submitted genomic | NC_000007.13:g.(?_ 112515072)_(112519 782_?)del | GRCh37 (hg19) | NC_000007.13 | Chr7 | 112,515,072 | 112,519,782 |