nsv3113339
- Organism: Homo sapiens
- Study:nstd145 (Lu et al. 2017)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:GRCh37 (hg19)
- Variant Calls:34
- Validation:Not tested
- Clinical Assertions: No
- Region Size:2,702
- Publication(s):Lu et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 449 SVs from 70 studies. See in: genome view
Overlapping variant regions from other studies: 449 SVs from 70 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3113339 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nsv3113339 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14103404 | deletion | sample7 | Oligo aCGH | Probe signal intensity | 91 |
| nssv14103539 | deletion | sample31 | Oligo aCGH | Probe signal intensity | 78 |
| nssv14104271 | deletion | sample44 | Oligo aCGH | Probe signal intensity | 90 |
| nssv14104281 | deletion | sample46 | Oligo aCGH | Probe signal intensity | 92 |
| nssv14104288 | deletion | sample47 | Oligo aCGH | Probe signal intensity | 77 |
| nssv14104292 | deletion | sample48 | Oligo aCGH | Probe signal intensity | 81 |
| nssv14104359 | deletion | sample58 | Oligo aCGH | Probe signal intensity | 85 |
| nssv14104407 | deletion | sample64 | Oligo aCGH | Probe signal intensity | 54 |
| nssv14104456 | deletion | sample73 | Oligo aCGH | Probe signal intensity | 73 |
| nssv14104542 | deletion | sample89 | Oligo aCGH | Probe signal intensity | 102 |
| nssv14104551 | deletion | sample90 | Oligo aCGH | Probe signal intensity | 91 |
| nssv14105274 | deletion | sample93 | Oligo aCGH | Probe signal intensity | 88 |
| nssv14105387 | deletion | sample112 | Oligo aCGH | Probe signal intensity | 81 |
| nssv14105427 | deletion | sample118 | Oligo aCGH | Probe signal intensity | 95 |
| nssv14105446 | deletion | sample121 | Oligo aCGH | Probe signal intensity | 25 |
| nssv14105503 | deletion | sample403 | Oligo aCGH | Probe signal intensity | 69 |
| nssv14105921 | deletion | sample125 | Oligo aCGH | Probe signal intensity | 70 |
| nssv14105995 | deletion | sample137 | Oligo aCGH | Probe signal intensity | 82 |
| nssv14106551 | deletion | sample164 | Oligo aCGH | Probe signal intensity | 57 |
| nssv14106667 | deletion | sample186 | Oligo aCGH | Probe signal intensity | 82 |
| nssv14106686 | deletion | sample188 | Oligo aCGH | Probe signal intensity | 83 |
| nssv14107922 | deletion | sample303 | Oligo aCGH | Probe signal intensity | 81 |
| nssv14107955 | deletion | sample309 | Oligo aCGH | Probe signal intensity | 93 |
| nssv14108130 | deletion | sample202 | Oligo aCGH | Probe signal intensity | 86 |
| nssv14108322 | deletion | sample234 | Oligo aCGH | Probe signal intensity | 93 |
| nssv14108491 | deletion | sample343 | Oligo aCGH | Probe signal intensity | 82 |
| nssv14108567 | deletion | sample359 | Oligo aCGH | Probe signal intensity | 103 |
| nssv14108570 | deletion | sample360 | Oligo aCGH | Probe signal intensity | 120 |
| nssv14108620 | deletion | sample368 | Oligo aCGH | Probe signal intensity | 80 |
| nssv14108680 | deletion | sample380 | Oligo aCGH | Probe signal intensity | 98 |
| nssv14108696 | deletion | sample382 | Oligo aCGH | Probe signal intensity | 83 |
| nssv14108726 | deletion | sample387 | Oligo aCGH | Probe signal intensity | 78 |
| nssv14108728 | deletion | sample389 | Oligo aCGH | Probe signal intensity | 21 |
| nssv14108742 | deletion | sample391 | Oligo aCGH | Probe signal intensity | 81 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14103404 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14103539 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14104271 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14104281 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14104288 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14104292 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14104359 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14104407 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14104456 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14104542 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14104551 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14105274 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14105387 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14105427 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14105446 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14105503 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14105921 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14105995 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14106551 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14106667 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14106686 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14107922 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14107955 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14108130 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14108322 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14108491 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14108567 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14108570 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14108620 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14108680 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14108696 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14108726 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14108728 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14108742 | Remapped | Perfect | NC_000003.12:g.(?_ 190019695)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,695 | 190,022,396 |
| nssv14103404 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14103539 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14104271 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14104281 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14104288 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14104292 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14104359 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14104407 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14104456 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14104542 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14104551 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14105274 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14105387 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14105427 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14105446 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14105503 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14105921 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14105995 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14106551 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14106667 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14106686 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14107922 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14107955 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14108130 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14108322 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14108491 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14108567 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14108570 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14108620 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14108680 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14108696 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14108726 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14108728 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 | ||
| nssv14108742 | Submitted genomic | NC_000003.11:g.(?_ 189737484)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,484 | 189,740,185 |