nsv3113346
- Organism: Homo sapiens
- Study:nstd145 (Lu et al. 2017)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:GRCh37 (hg19)
- Variant Calls:33
- Validation:Not tested
- Clinical Assertions: No
- Region Size:4,176
- Publication(s):Lu et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 406 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 412 SVs from 70 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3113346 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nsv3113346 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14086899 | deletion | sample220 | Oligo aCGH | Probe signal intensity | 73 |
| nssv14087872 | deletion | sample233 | Oligo aCGH | Probe signal intensity | 77 |
| nssv14087879 | deletion | sample235 | Oligo aCGH | Probe signal intensity | 64 |
| nssv14087908 | deletion | sample247 | Oligo aCGH | Probe signal intensity | 21 |
| nssv14087969 | deletion | sample273 | Oligo aCGH | Probe signal intensity | 88 |
| nssv14087983 | deletion | sample278 | Oligo aCGH | Probe signal intensity | 83 |
| nssv14087988 | deletion | sample280 | Oligo aCGH | Probe signal intensity | 42 |
| nssv14088007 | deletion | sample290 | Oligo aCGH | Probe signal intensity | 82 |
| nssv14088438 | deletion | sample19 | Oligo aCGH | Probe signal intensity | 101 |
| nssv14088830 | deletion | sample394 | Oligo aCGH | Probe signal intensity | 69 |
| nssv14088872 | deletion | sample414 | Oligo aCGH | Probe signal intensity | 53 |
| nssv14088885 | deletion | sample420 | Oligo aCGH | Probe signal intensity | 92 |
| nssv14088899 | deletion | sample424 | Oligo aCGH | Probe signal intensity | 70 |
| nssv14089456 | deletion | sample38 | Oligo aCGH | Probe signal intensity | 92 |
| nssv14089466 | deletion | sample42 | Oligo aCGH | Probe signal intensity | 82 |
| nssv14089480 | deletion | sample45 | Oligo aCGH | Probe signal intensity | 79 |
| nssv14089492 | deletion | sample49 | Oligo aCGH | Probe signal intensity | 43 |
| nssv14089496 | deletion | sample51 | Oligo aCGH | Probe signal intensity | 81 |
| nssv14089541 | deletion | sample71 | Oligo aCGH | Probe signal intensity | 91 |
| nssv14089544 | deletion | sample73 | Oligo aCGH | Probe signal intensity | 73 |
| nssv14089561 | deletion | sample79 | Oligo aCGH | Probe signal intensity | 76 |
| nssv14089574 | deletion | sample84 | Oligo aCGH | Probe signal intensity | 76 |
| nssv14089581 | deletion | sample89 | Oligo aCGH | Probe signal intensity | 102 |
| nssv14089590 | deletion | sample91 | Oligo aCGH | Probe signal intensity | 90 |
| nssv14089607 | deletion | sample100 | Oligo aCGH | Probe signal intensity | 75 |
| nssv14089635 | deletion | sample113 | Oligo aCGH | Probe signal intensity | 90 |
| nssv14089676 | deletion | sample128 | Oligo aCGH | Probe signal intensity | 79 |
| nssv14089723 | deletion | sample148 | Oligo aCGH | Probe signal intensity | 80 |
| nssv14089730 | deletion | sample150 | Oligo aCGH | Probe signal intensity | 83 |
| nssv14089761 | deletion | sample163 | Oligo aCGH | Probe signal intensity | 93 |
| nssv14090774 | deletion | sample170 | Oligo aCGH | Probe signal intensity | 62 |
| nssv14090836 | deletion | sample198 | Oligo aCGH | Probe signal intensity | 84 |
| nssv14090874 | deletion | sample218 | Oligo aCGH | Probe signal intensity | 76 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14086899 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14087872 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14087879 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14087908 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14087969 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14087983 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14087988 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14088007 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14088438 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14088830 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14088872 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14088885 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14088899 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14089456 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14089466 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14089480 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14089492 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14089496 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14089541 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14089544 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14089561 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14089574 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14089581 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14089590 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14089607 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14089635 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14089676 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14089723 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14089730 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14089761 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14090774 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14090836 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14090874 | Remapped | Perfect | NC_000009.12:g.(?_ 29093648)_(2909782 3_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 29,093,648 | 29,097,823 |
| nssv14086899 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 | ||
| nssv14087872 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 | ||
| nssv14087879 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 | ||
| nssv14087908 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 | ||
| nssv14087969 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 | ||
| nssv14087983 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 | ||
| nssv14087988 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 | ||
| nssv14088007 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 | ||
| nssv14088438 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 | ||
| nssv14088830 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 | ||
| nssv14088872 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 | ||
| nssv14088885 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 | ||
| nssv14088899 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 | ||
| nssv14089456 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 | ||
| nssv14089466 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 | ||
| nssv14089480 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 | ||
| nssv14089492 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 | ||
| nssv14089496 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 | ||
| nssv14089541 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 | ||
| nssv14089544 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 | ||
| nssv14089561 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 | ||
| nssv14089574 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 | ||
| nssv14089581 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 | ||
| nssv14089590 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 | ||
| nssv14089607 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 | ||
| nssv14089635 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 | ||
| nssv14089676 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 | ||
| nssv14089723 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 | ||
| nssv14089730 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 | ||
| nssv14089761 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 | ||
| nssv14090774 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 | ||
| nssv14090836 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 | ||
| nssv14090874 | Submitted genomic | NC_000009.11:g.(?_ 29093646)_(2909782 1_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 29,093,646 | 29,097,821 |