nsv3113766

Organism: Homo sapiens

Study:nstd145 (Lu et al. 2017)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:21
Validation:Not tested
Clinical Assertions: No
Region Size:10,770

Publication(s):Lu et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 149 SVs from 39 studies. See in: genome view

Remapped(Score: Perfect):12,054,750-12,065,519

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3113766	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000019.10	Chr19	12,054,750	12,065,519
nsv3113766	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000019.9	Chr19	12,165,565	12,176,334

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14098983	deletion	sample407	Oligo aCGH	Probe signal intensity	63
nssv14099007	deletion	sample417	Oligo aCGH	Probe signal intensity	83
nssv14099679	deletion	sample140	Oligo aCGH	Probe signal intensity	85
nssv14099692	deletion	sample142	Oligo aCGH	Probe signal intensity	89
nssv14100343	deletion	sample150	Oligo aCGH	Probe signal intensity	83
nssv14100473	deletion	sample197	Oligo aCGH	Probe signal intensity	86
nssv14100532	deletion	sample222	Oligo aCGH	Probe signal intensity	71
nssv14100561	deletion	sample232	Oligo aCGH	Probe signal intensity	80
nssv14100567	deletion	sample234	Oligo aCGH	Probe signal intensity	93
nssv14101007	deletion	sample10	Oligo aCGH	Probe signal intensity	78
nssv14101033	deletion	sample19	Oligo aCGH	Probe signal intensity	101
nssv14101100	deletion	sample40	Oligo aCGH	Probe signal intensity	87
nssv14101192	deletion	sample69	Oligo aCGH	Probe signal intensity	90
nssv14101237	deletion	sample89	Oligo aCGH	Probe signal intensity	102
nssv14101264	deletion	sample273	Oligo aCGH	Probe signal intensity	88
nssv14101284	deletion	sample278	Oligo aCGH	Probe signal intensity	83
nssv14101347	deletion	sample300	Oligo aCGH	Probe signal intensity	97
nssv14101447	deletion	sample343	Oligo aCGH	Probe signal intensity	82
nssv14101483	deletion	sample359	Oligo aCGH	Probe signal intensity	103
nssv14102888	deletion	sample397	Oligo aCGH	Probe signal intensity	112
nssv14102904	deletion	sample402	Oligo aCGH	Probe signal intensity	95

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14098983	Remapped	Perfect	NC_000019.10:g.(?_ 12054750)_(1206551 9_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	12,054,750	12,065,519
nssv14099007	Remapped	Perfect	NC_000019.10:g.(?_ 12054750)_(1206551 9_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	12,054,750	12,065,519
nssv14099679	Remapped	Perfect	NC_000019.10:g.(?_ 12054750)_(1206551 9_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	12,054,750	12,065,519
nssv14099692	Remapped	Perfect	NC_000019.10:g.(?_ 12054750)_(1206551 9_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	12,054,750	12,065,519
nssv14100343	Remapped	Perfect	NC_000019.10:g.(?_ 12054750)_(1206551 9_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	12,054,750	12,065,519
nssv14100473	Remapped	Perfect	NC_000019.10:g.(?_ 12054750)_(1206551 9_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	12,054,750	12,065,519
nssv14100532	Remapped	Perfect	NC_000019.10:g.(?_ 12054750)_(1206551 9_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	12,054,750	12,065,519
nssv14100561	Remapped	Perfect	NC_000019.10:g.(?_ 12054750)_(1206551 9_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	12,054,750	12,065,519
nssv14100567	Remapped	Perfect	NC_000019.10:g.(?_ 12054750)_(1206551 9_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	12,054,750	12,065,519
nssv14101007	Remapped	Perfect	NC_000019.10:g.(?_ 12054750)_(1206551 9_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	12,054,750	12,065,519
nssv14101033	Remapped	Perfect	NC_000019.10:g.(?_ 12054750)_(1206551 9_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	12,054,750	12,065,519
nssv14101100	Remapped	Perfect	NC_000019.10:g.(?_ 12054750)_(1206551 9_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	12,054,750	12,065,519
nssv14101192	Remapped	Perfect	NC_000019.10:g.(?_ 12054750)_(1206551 9_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	12,054,750	12,065,519
nssv14101237	Remapped	Perfect	NC_000019.10:g.(?_ 12054750)_(1206551 9_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	12,054,750	12,065,519
nssv14101264	Remapped	Perfect	NC_000019.10:g.(?_ 12054750)_(1206551 9_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	12,054,750	12,065,519
nssv14101284	Remapped	Perfect	NC_000019.10:g.(?_ 12054750)_(1206551 9_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	12,054,750	12,065,519
nssv14101347	Remapped	Perfect	NC_000019.10:g.(?_ 12054750)_(1206551 9_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	12,054,750	12,065,519
nssv14101447	Remapped	Perfect	NC_000019.10:g.(?_ 12054750)_(1206551 9_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	12,054,750	12,065,519
nssv14101483	Remapped	Perfect	NC_000019.10:g.(?_ 12054750)_(1206551 9_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	12,054,750	12,065,519
nssv14102888	Remapped	Perfect	NC_000019.10:g.(?_ 12054750)_(1206551 9_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	12,054,750	12,065,519
nssv14102904	Remapped	Perfect	NC_000019.10:g.(?_ 12054750)_(1206551 9_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	12,054,750	12,065,519
nssv14098983	Submitted genomic		NC_000019.9:g.(?_1 2165565)_(12176334 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	12,165,565	12,176,334
nssv14099007	Submitted genomic		NC_000019.9:g.(?_1 2165565)_(12176334 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	12,165,565	12,176,334
nssv14099679	Submitted genomic		NC_000019.9:g.(?_1 2165565)_(12176334 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	12,165,565	12,176,334
nssv14099692	Submitted genomic		NC_000019.9:g.(?_1 2165565)_(12176334 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	12,165,565	12,176,334
nssv14100343	Submitted genomic		NC_000019.9:g.(?_1 2165565)_(12176334 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	12,165,565	12,176,334
nssv14100473	Submitted genomic		NC_000019.9:g.(?_1 2165565)_(12176334 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	12,165,565	12,176,334
nssv14100532	Submitted genomic		NC_000019.9:g.(?_1 2165565)_(12176334 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	12,165,565	12,176,334
nssv14100561	Submitted genomic		NC_000019.9:g.(?_1 2165565)_(12176334 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	12,165,565	12,176,334
nssv14100567	Submitted genomic		NC_000019.9:g.(?_1 2165565)_(12176334 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	12,165,565	12,176,334
nssv14101007	Submitted genomic		NC_000019.9:g.(?_1 2165565)_(12176334 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	12,165,565	12,176,334
nssv14101033	Submitted genomic		NC_000019.9:g.(?_1 2165565)_(12176334 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	12,165,565	12,176,334
nssv14101100	Submitted genomic		NC_000019.9:g.(?_1 2165565)_(12176334 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	12,165,565	12,176,334
nssv14101192	Submitted genomic		NC_000019.9:g.(?_1 2165565)_(12176334 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	12,165,565	12,176,334
nssv14101237	Submitted genomic		NC_000019.9:g.(?_1 2165565)_(12176334 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	12,165,565	12,176,334
nssv14101264	Submitted genomic		NC_000019.9:g.(?_1 2165565)_(12176334 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	12,165,565	12,176,334
nssv14101284	Submitted genomic		NC_000019.9:g.(?_1 2165565)_(12176334 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	12,165,565	12,176,334
nssv14101347	Submitted genomic		NC_000019.9:g.(?_1 2165565)_(12176334 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	12,165,565	12,176,334
nssv14101447	Submitted genomic		NC_000019.9:g.(?_1 2165565)_(12176334 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	12,165,565	12,176,334
nssv14101483	Submitted genomic		NC_000019.9:g.(?_1 2165565)_(12176334 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	12,165,565	12,176,334
nssv14102888	Submitted genomic		NC_000019.9:g.(?_1 2165565)_(12176334 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	12,165,565	12,176,334
nssv14102904	Submitted genomic		NC_000019.9:g.(?_1 2165565)_(12176334 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	12,165,565	12,176,334

dbVar

Database of genomic structural variation

nsv3113766

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant