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dbVar

Database of genomic structural variation

nsv3113934

Organism: Homo sapiens

Study:nstd145 (Lu et al. 2017)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:35,139

Publication(s):Lu et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 783 SVs from 75 studies. See in: genome view

Remapped(Score: Perfect):55,763,453-55,798,591

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3113934	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	55,763,453	55,798,591
nsv3113934	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000016.9	Chr16	55,797,365	55,832,503

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14098264	deletion	sample36	Oligo aCGH	Probe signal intensity	48
nssv14098324	deletion	sample62	Oligo aCGH	Probe signal intensity	54
nssv14098330	deletion	sample63	Oligo aCGH	Probe signal intensity	52
nssv14099090	deletion	sample126	Oligo aCGH	Probe signal intensity	37
nssv14099136	deletion	sample149	Oligo aCGH	Probe signal intensity	73
nssv14099138	deletion	sample151	Oligo aCGH	Probe signal intensity	12

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14098264	Remapped	Perfect	NC_000016.10:g.(?_ 55763453)_(5579859 1_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,763,453	55,798,591
nssv14098324	Remapped	Perfect	NC_000016.10:g.(?_ 55763453)_(5579859 1_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,763,453	55,798,591
nssv14098330	Remapped	Perfect	NC_000016.10:g.(?_ 55763453)_(5579859 1_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,763,453	55,798,591
nssv14099090	Remapped	Perfect	NC_000016.10:g.(?_ 55763453)_(5579859 1_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,763,453	55,798,591
nssv14099136	Remapped	Perfect	NC_000016.10:g.(?_ 55763453)_(5579859 1_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,763,453	55,798,591
nssv14099138	Remapped	Perfect	NC_000016.10:g.(?_ 55763453)_(5579859 1_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,763,453	55,798,591
nssv14098264	Submitted genomic		NC_000016.9:g.(?_5 5797365)_(55832503 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,797,365	55,832,503
nssv14098324	Submitted genomic		NC_000016.9:g.(?_5 5797365)_(55832503 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,797,365	55,832,503
nssv14098330	Submitted genomic		NC_000016.9:g.(?_5 5797365)_(55832503 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,797,365	55,832,503
nssv14099090	Submitted genomic		NC_000016.9:g.(?_5 5797365)_(55832503 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,797,365	55,832,503
nssv14099136	Submitted genomic		NC_000016.9:g.(?_5 5797365)_(55832503 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,797,365	55,832,503
nssv14099138	Submitted genomic		NC_000016.9:g.(?_5 5797365)_(55832503 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,797,365	55,832,503

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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