nsv3113934
- Organism: Homo sapiens
- Study:nstd145 (Lu et al. 2017)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:GRCh37 (hg19)
- Variant Calls:6
- Validation:Not tested
- Clinical Assertions: No
- Region Size:35,139
- Publication(s):Lu et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 783 SVs from 75 studies. See in: genome view
Overlapping variant regions from other studies: 783 SVs from 75 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nsv3113934 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000016.10 | Chr16 | 55,763,453 | 55,798,591 |
nsv3113934 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000016.9 | Chr16 | 55,797,365 | 55,832,503 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv14098264 | deletion | sample36 | Oligo aCGH | Probe signal intensity | 48 |
nssv14098324 | deletion | sample62 | Oligo aCGH | Probe signal intensity | 54 |
nssv14098330 | deletion | sample63 | Oligo aCGH | Probe signal intensity | 52 |
nssv14099090 | deletion | sample126 | Oligo aCGH | Probe signal intensity | 37 |
nssv14099136 | deletion | sample149 | Oligo aCGH | Probe signal intensity | 73 |
nssv14099138 | deletion | sample151 | Oligo aCGH | Probe signal intensity | 12 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nssv14098264 | Remapped | Perfect | NC_000016.10:g.(?_ 55763453)_(5579859 1_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 55,763,453 | 55,798,591 |
nssv14098324 | Remapped | Perfect | NC_000016.10:g.(?_ 55763453)_(5579859 1_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 55,763,453 | 55,798,591 |
nssv14098330 | Remapped | Perfect | NC_000016.10:g.(?_ 55763453)_(5579859 1_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 55,763,453 | 55,798,591 |
nssv14099090 | Remapped | Perfect | NC_000016.10:g.(?_ 55763453)_(5579859 1_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 55,763,453 | 55,798,591 |
nssv14099136 | Remapped | Perfect | NC_000016.10:g.(?_ 55763453)_(5579859 1_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 55,763,453 | 55,798,591 |
nssv14099138 | Remapped | Perfect | NC_000016.10:g.(?_ 55763453)_(5579859 1_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 55,763,453 | 55,798,591 |
nssv14098264 | Submitted genomic | NC_000016.9:g.(?_5 5797365)_(55832503 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 55,797,365 | 55,832,503 | ||
nssv14098324 | Submitted genomic | NC_000016.9:g.(?_5 5797365)_(55832503 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 55,797,365 | 55,832,503 | ||
nssv14098330 | Submitted genomic | NC_000016.9:g.(?_5 5797365)_(55832503 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 55,797,365 | 55,832,503 | ||
nssv14099090 | Submitted genomic | NC_000016.9:g.(?_5 5797365)_(55832503 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 55,797,365 | 55,832,503 | ||
nssv14099136 | Submitted genomic | NC_000016.9:g.(?_5 5797365)_(55832503 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 55,797,365 | 55,832,503 | ||
nssv14099138 | Submitted genomic | NC_000016.9:g.(?_5 5797365)_(55832503 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 55,797,365 | 55,832,503 |