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dbVar

Database of genomic structural variation

nsv3114465

Organism: Homo sapiens

Study:nstd145 (Lu et al. 2017)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:12,700

Publication(s):Lu et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 923 SVs from 78 studies. See in: genome view

Remapped(Score: Perfect):78,337,956-78,350,655

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3114465	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	78,337,956	78,350,655
nsv3114465	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000016.9	Chr16	78,371,853	78,384,552

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14096422	deletion	sample275	Oligo aCGH	Probe signal intensity	94
nssv14098233	deletion	sample17	Oligo aCGH	Probe signal intensity	61
nssv14099078	deletion	sample120	Oligo aCGH	Probe signal intensity	85
nssv14099084	deletion	sample122	Oligo aCGH	Probe signal intensity	97
nssv14099087	deletion	sample124	Oligo aCGH	Probe signal intensity	58
nssv14099117	deletion	sample142	Oligo aCGH	Probe signal intensity	89

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14096422	Remapped	Perfect	NC_000016.10:g.(?_ 78337956)_(7835065 5_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	78,337,956	78,350,655
nssv14098233	Remapped	Perfect	NC_000016.10:g.(?_ 78337956)_(7835065 5_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	78,337,956	78,350,655
nssv14099078	Remapped	Perfect	NC_000016.10:g.(?_ 78337956)_(7835065 5_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	78,337,956	78,350,655
nssv14099084	Remapped	Perfect	NC_000016.10:g.(?_ 78337956)_(7835065 5_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	78,337,956	78,350,655
nssv14099087	Remapped	Perfect	NC_000016.10:g.(?_ 78337956)_(7835065 5_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	78,337,956	78,350,655
nssv14099117	Remapped	Perfect	NC_000016.10:g.(?_ 78337956)_(7835065 5_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	78,337,956	78,350,655
nssv14096422	Submitted genomic		NC_000016.9:g.(?_7 8371853)_(78384552 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	78,371,853	78,384,552
nssv14098233	Submitted genomic		NC_000016.9:g.(?_7 8371853)_(78384552 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	78,371,853	78,384,552
nssv14099078	Submitted genomic		NC_000016.9:g.(?_7 8371853)_(78384552 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	78,371,853	78,384,552
nssv14099084	Submitted genomic		NC_000016.9:g.(?_7 8371853)_(78384552 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	78,371,853	78,384,552
nssv14099087	Submitted genomic		NC_000016.9:g.(?_7 8371853)_(78384552 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	78,371,853	78,384,552
nssv14099117	Submitted genomic		NC_000016.9:g.(?_7 8371853)_(78384552 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	78,371,853	78,384,552

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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