nsv3114466
- Organism: Homo sapiens
- Study:nstd145 (Lu et al. 2017)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:GRCh37 (hg19)
- Variant Calls:10
- Validation:Not tested
- Clinical Assertions: No
- Region Size:2,845
- Publication(s):Lu et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 329 SVs from 56 studies. See in: genome view
Overlapping variant regions from other studies: 335 SVs from 56 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3114466 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 52,256,368 | 52,259,212 |
| nsv3114466 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000010.10 | Chr10 | 54,016,128 | 54,018,972 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14087541 | deletion | sample166 | Oligo aCGH | Probe signal intensity | 49 |
| nssv14088504 | deletion | sample175 | Oligo aCGH | Probe signal intensity | 65 |
| nssv14088513 | deletion | sample177 | Oligo aCGH | Probe signal intensity | 84 |
| nssv14088548 | deletion | sample193 | Oligo aCGH | Probe signal intensity | 31 |
| nssv14088586 | deletion | sample209 | Oligo aCGH | Probe signal intensity | 62 |
| nssv14088608 | deletion | sample224 | Oligo aCGH | Probe signal intensity | 68 |
| nssv14088617 | deletion | sample227 | Oligo aCGH | Probe signal intensity | 75 |
| nssv14088625 | deletion | sample229 | Oligo aCGH | Probe signal intensity | 49 |
| nssv14088796 | deletion | sample323 | Oligo aCGH | Probe signal intensity | 63 |
| nssv14088986 | deletion | sample41 | Oligo aCGH | Probe signal intensity | 68 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14087541 | Remapped | Perfect | NC_000010.11:g.(?_ 52256368)_(5225921 2_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 52,256,368 | 52,259,212 |
| nssv14088504 | Remapped | Perfect | NC_000010.11:g.(?_ 52256368)_(5225921 2_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 52,256,368 | 52,259,212 |
| nssv14088513 | Remapped | Perfect | NC_000010.11:g.(?_ 52256368)_(5225921 2_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 52,256,368 | 52,259,212 |
| nssv14088548 | Remapped | Perfect | NC_000010.11:g.(?_ 52256368)_(5225921 2_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 52,256,368 | 52,259,212 |
| nssv14088586 | Remapped | Perfect | NC_000010.11:g.(?_ 52256368)_(5225921 2_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 52,256,368 | 52,259,212 |
| nssv14088608 | Remapped | Perfect | NC_000010.11:g.(?_ 52256368)_(5225921 2_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 52,256,368 | 52,259,212 |
| nssv14088617 | Remapped | Perfect | NC_000010.11:g.(?_ 52256368)_(5225921 2_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 52,256,368 | 52,259,212 |
| nssv14088625 | Remapped | Perfect | NC_000010.11:g.(?_ 52256368)_(5225921 2_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 52,256,368 | 52,259,212 |
| nssv14088796 | Remapped | Perfect | NC_000010.11:g.(?_ 52256368)_(5225921 2_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 52,256,368 | 52,259,212 |
| nssv14088986 | Remapped | Perfect | NC_000010.11:g.(?_ 52256368)_(5225921 2_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 52,256,368 | 52,259,212 |
| nssv14087541 | Submitted genomic | NC_000010.10:g.(?_ 54016128)_(5401897 2_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 54,016,128 | 54,018,972 | ||
| nssv14088504 | Submitted genomic | NC_000010.10:g.(?_ 54016128)_(5401897 2_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 54,016,128 | 54,018,972 | ||
| nssv14088513 | Submitted genomic | NC_000010.10:g.(?_ 54016128)_(5401897 2_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 54,016,128 | 54,018,972 | ||
| nssv14088548 | Submitted genomic | NC_000010.10:g.(?_ 54016128)_(5401897 2_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 54,016,128 | 54,018,972 | ||
| nssv14088586 | Submitted genomic | NC_000010.10:g.(?_ 54016128)_(5401897 2_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 54,016,128 | 54,018,972 | ||
| nssv14088608 | Submitted genomic | NC_000010.10:g.(?_ 54016128)_(5401897 2_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 54,016,128 | 54,018,972 | ||
| nssv14088617 | Submitted genomic | NC_000010.10:g.(?_ 54016128)_(5401897 2_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 54,016,128 | 54,018,972 | ||
| nssv14088625 | Submitted genomic | NC_000010.10:g.(?_ 54016128)_(5401897 2_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 54,016,128 | 54,018,972 | ||
| nssv14088796 | Submitted genomic | NC_000010.10:g.(?_ 54016128)_(5401897 2_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 54,016,128 | 54,018,972 | ||
| nssv14088986 | Submitted genomic | NC_000010.10:g.(?_ 54016128)_(5401897 2_?)del | GRCh37 (hg19) | NC_000010.10 | Chr10 | 54,016,128 | 54,018,972 |