nsv3114516
- Organism: Homo sapiens
- Study:nstd145 (Lu et al. 2017)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:GRCh37 (hg19)
- Variant Calls:21
- Validation:Not tested
- Clinical Assertions: No
- Region Size:4,787
- Publication(s):Lu et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 186 SVs from 49 studies. See in: genome view
Overlapping variant regions from other studies: 186 SVs from 49 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3114516 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 47,915,569 | 47,920,355 |
| nsv3114516 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000015.9 | Chr15 | 48,207,766 | 48,212,552 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14095275 | deletion | sample5 | Oligo aCGH | Probe signal intensity | 69 |
| nssv14095294 | deletion | sample14 | Oligo aCGH | Probe signal intensity | 61 |
| nssv14095942 | deletion | sample28 | Oligo aCGH | Probe signal intensity | 68 |
| nssv14095950 | deletion | sample33 | Oligo aCGH | Probe signal intensity | 71 |
| nssv14096119 | deletion | sample127 | Oligo aCGH | Probe signal intensity | 60 |
| nssv14096164 | deletion | sample148 | Oligo aCGH | Probe signal intensity | 80 |
| nssv14096217 | deletion | sample171 | Oligo aCGH | Probe signal intensity | 83 |
| nssv14097044 | deletion | sample259 | Oligo aCGH | Probe signal intensity | 86 |
| nssv14097067 | deletion | sample272 | Oligo aCGH | Probe signal intensity | 54 |
| nssv14097071 | deletion | sample274 | Oligo aCGH | Probe signal intensity | 73 |
| nssv14097127 | deletion | sample312 | Oligo aCGH | Probe signal intensity | 89 |
| nssv14097130 | deletion | sample313 | Oligo aCGH | Probe signal intensity | 80 |
| nssv14097184 | deletion | sample353 | Oligo aCGH | Probe signal intensity | 46 |
| nssv14097216 | deletion | sample373 | Oligo aCGH | Probe signal intensity | 100 |
| nssv14097504 | deletion | sample191 | Oligo aCGH | Probe signal intensity | 68 |
| nssv14097520 | deletion | sample200 | Oligo aCGH | Probe signal intensity | 73 |
| nssv14097527 | deletion | sample203 | Oligo aCGH | Probe signal intensity | 88 |
| nssv14098145 | deletion | sample395 | Oligo aCGH | Probe signal intensity | 85 |
| nssv14098154 | deletion | sample400 | Oligo aCGH | Probe signal intensity | 92 |
| nssv14098162 | deletion | sample403 | Oligo aCGH | Probe signal intensity | 69 |
| nssv14098195 | deletion | sample421 | Oligo aCGH | Probe signal intensity | 52 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14095275 | Remapped | Perfect | NC_000015.10:g.(?_ 47915569)_(4792035 5_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,915,569 | 47,920,355 |
| nssv14095294 | Remapped | Perfect | NC_000015.10:g.(?_ 47915569)_(4792035 5_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,915,569 | 47,920,355 |
| nssv14095942 | Remapped | Perfect | NC_000015.10:g.(?_ 47915569)_(4792035 5_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,915,569 | 47,920,355 |
| nssv14095950 | Remapped | Perfect | NC_000015.10:g.(?_ 47915569)_(4792035 5_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,915,569 | 47,920,355 |
| nssv14096119 | Remapped | Perfect | NC_000015.10:g.(?_ 47915569)_(4792035 5_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,915,569 | 47,920,355 |
| nssv14096164 | Remapped | Perfect | NC_000015.10:g.(?_ 47915569)_(4792035 5_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,915,569 | 47,920,355 |
| nssv14096217 | Remapped | Perfect | NC_000015.10:g.(?_ 47915569)_(4792035 5_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,915,569 | 47,920,355 |
| nssv14097044 | Remapped | Perfect | NC_000015.10:g.(?_ 47915569)_(4792035 5_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,915,569 | 47,920,355 |
| nssv14097067 | Remapped | Perfect | NC_000015.10:g.(?_ 47915569)_(4792035 5_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,915,569 | 47,920,355 |
| nssv14097071 | Remapped | Perfect | NC_000015.10:g.(?_ 47915569)_(4792035 5_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,915,569 | 47,920,355 |
| nssv14097127 | Remapped | Perfect | NC_000015.10:g.(?_ 47915569)_(4792035 5_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,915,569 | 47,920,355 |
| nssv14097130 | Remapped | Perfect | NC_000015.10:g.(?_ 47915569)_(4792035 5_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,915,569 | 47,920,355 |
| nssv14097184 | Remapped | Perfect | NC_000015.10:g.(?_ 47915569)_(4792035 5_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,915,569 | 47,920,355 |
| nssv14097216 | Remapped | Perfect | NC_000015.10:g.(?_ 47915569)_(4792035 5_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,915,569 | 47,920,355 |
| nssv14097504 | Remapped | Perfect | NC_000015.10:g.(?_ 47915569)_(4792035 5_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,915,569 | 47,920,355 |
| nssv14097520 | Remapped | Perfect | NC_000015.10:g.(?_ 47915569)_(4792035 5_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,915,569 | 47,920,355 |
| nssv14097527 | Remapped | Perfect | NC_000015.10:g.(?_ 47915569)_(4792035 5_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,915,569 | 47,920,355 |
| nssv14098145 | Remapped | Perfect | NC_000015.10:g.(?_ 47915569)_(4792035 5_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,915,569 | 47,920,355 |
| nssv14098154 | Remapped | Perfect | NC_000015.10:g.(?_ 47915569)_(4792035 5_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,915,569 | 47,920,355 |
| nssv14098162 | Remapped | Perfect | NC_000015.10:g.(?_ 47915569)_(4792035 5_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,915,569 | 47,920,355 |
| nssv14098195 | Remapped | Perfect | NC_000015.10:g.(?_ 47915569)_(4792035 5_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 47,915,569 | 47,920,355 |
| nssv14095275 | Submitted genomic | NC_000015.9:g.(?_4 8207766)_(48212552 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,207,766 | 48,212,552 | ||
| nssv14095294 | Submitted genomic | NC_000015.9:g.(?_4 8207766)_(48212552 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,207,766 | 48,212,552 | ||
| nssv14095942 | Submitted genomic | NC_000015.9:g.(?_4 8207766)_(48212552 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,207,766 | 48,212,552 | ||
| nssv14095950 | Submitted genomic | NC_000015.9:g.(?_4 8207766)_(48212552 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,207,766 | 48,212,552 | ||
| nssv14096119 | Submitted genomic | NC_000015.9:g.(?_4 8207766)_(48212552 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,207,766 | 48,212,552 | ||
| nssv14096164 | Submitted genomic | NC_000015.9:g.(?_4 8207766)_(48212552 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,207,766 | 48,212,552 | ||
| nssv14096217 | Submitted genomic | NC_000015.9:g.(?_4 8207766)_(48212552 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,207,766 | 48,212,552 | ||
| nssv14097044 | Submitted genomic | NC_000015.9:g.(?_4 8207766)_(48212552 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,207,766 | 48,212,552 | ||
| nssv14097067 | Submitted genomic | NC_000015.9:g.(?_4 8207766)_(48212552 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,207,766 | 48,212,552 | ||
| nssv14097071 | Submitted genomic | NC_000015.9:g.(?_4 8207766)_(48212552 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,207,766 | 48,212,552 | ||
| nssv14097127 | Submitted genomic | NC_000015.9:g.(?_4 8207766)_(48212552 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,207,766 | 48,212,552 | ||
| nssv14097130 | Submitted genomic | NC_000015.9:g.(?_4 8207766)_(48212552 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,207,766 | 48,212,552 | ||
| nssv14097184 | Submitted genomic | NC_000015.9:g.(?_4 8207766)_(48212552 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,207,766 | 48,212,552 | ||
| nssv14097216 | Submitted genomic | NC_000015.9:g.(?_4 8207766)_(48212552 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,207,766 | 48,212,552 | ||
| nssv14097504 | Submitted genomic | NC_000015.9:g.(?_4 8207766)_(48212552 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,207,766 | 48,212,552 | ||
| nssv14097520 | Submitted genomic | NC_000015.9:g.(?_4 8207766)_(48212552 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,207,766 | 48,212,552 | ||
| nssv14097527 | Submitted genomic | NC_000015.9:g.(?_4 8207766)_(48212552 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,207,766 | 48,212,552 | ||
| nssv14098145 | Submitted genomic | NC_000015.9:g.(?_4 8207766)_(48212552 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,207,766 | 48,212,552 | ||
| nssv14098154 | Submitted genomic | NC_000015.9:g.(?_4 8207766)_(48212552 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,207,766 | 48,212,552 | ||
| nssv14098162 | Submitted genomic | NC_000015.9:g.(?_4 8207766)_(48212552 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,207,766 | 48,212,552 | ||
| nssv14098195 | Submitted genomic | NC_000015.9:g.(?_4 8207766)_(48212552 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 48,207,766 | 48,212,552 |