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dbVar

Database of genomic structural variation

nsv3114635

Organism: Homo sapiens

Study:nstd145 (Lu et al. 2017)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:23,887

Publication(s):Lu et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 433 SVs from 62 studies. See in: genome view

Remapped(Score: Perfect):89,345,123-89,369,009

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3114635	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	89,345,123	89,369,009
nsv3114635	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000003.11	Chr3	89,394,273	89,418,159

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14103369	deletion	sample1	Oligo aCGH	Probe signal intensity	77
nssv14104215	deletion	sample35	Oligo aCGH	Probe signal intensity	54
nssv14104354	deletion	sample58	Oligo aCGH	Probe signal intensity	85
nssv14107947	deletion	sample308	Oligo aCGH	Probe signal intensity	60
nssv14108310	deletion	sample233	Oligo aCGH	Probe signal intensity	77

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14103369	Remapped	Perfect	NC_000003.12:g.(?_ 89345123)_(8936900 9_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	89,345,123	89,369,009
nssv14104215	Remapped	Perfect	NC_000003.12:g.(?_ 89345123)_(8936900 9_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	89,345,123	89,369,009
nssv14104354	Remapped	Perfect	NC_000003.12:g.(?_ 89345123)_(8936900 9_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	89,345,123	89,369,009
nssv14107947	Remapped	Perfect	NC_000003.12:g.(?_ 89345123)_(8936900 9_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	89,345,123	89,369,009
nssv14108310	Remapped	Perfect	NC_000003.12:g.(?_ 89345123)_(8936900 9_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	89,345,123	89,369,009
nssv14103369	Submitted genomic		NC_000003.11:g.(?_ 89394273)_(8941815 9_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	89,394,273	89,418,159
nssv14104215	Submitted genomic		NC_000003.11:g.(?_ 89394273)_(8941815 9_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	89,394,273	89,418,159
nssv14104354	Submitted genomic		NC_000003.11:g.(?_ 89394273)_(8941815 9_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	89,394,273	89,418,159
nssv14107947	Submitted genomic		NC_000003.11:g.(?_ 89394273)_(8941815 9_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	89,394,273	89,418,159
nssv14108310	Submitted genomic		NC_000003.11:g.(?_ 89394273)_(8941815 9_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	89,394,273	89,418,159

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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