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dbVar

Database of genomic structural variation

nsv3114991

Organism: Homo sapiens

Study:nstd145 (Lu et al. 2017)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:36,674

Publication(s):Lu et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 821 SVs from 65 studies. See in: genome view

Remapped(Score: Perfect):4,199,999-4,236,672

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3114991	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	4,199,999	4,236,672
nsv3114991	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000003.11	Chr3	4,241,683	4,278,356

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14104422	deletion	sample69	Oligo aCGH	Probe signal intensity	90
nssv14105266	deletion	sample93	Oligo aCGH	Probe signal intensity	88
nssv14106649	deletion	sample183	Oligo aCGH	Probe signal intensity	33
nssv14108577	deletion	sample362	Oligo aCGH	Probe signal intensity	70

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14104422	Remapped	Perfect	NC_000003.12:g.(?_ 4199999)_(4236672_ ?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	4,199,999	4,236,672
nssv14105266	Remapped	Perfect	NC_000003.12:g.(?_ 4199999)_(4236672_ ?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	4,199,999	4,236,672
nssv14106649	Remapped	Perfect	NC_000003.12:g.(?_ 4199999)_(4236672_ ?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	4,199,999	4,236,672
nssv14108577	Remapped	Perfect	NC_000003.12:g.(?_ 4199999)_(4236672_ ?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	4,199,999	4,236,672
nssv14104422	Submitted genomic		NC_000003.11:g.(?_ 4241683)_(4278356_ ?)del	GRCh37 (hg19)		NC_000003.11	Chr3	4,241,683	4,278,356
nssv14105266	Submitted genomic		NC_000003.11:g.(?_ 4241683)_(4278356_ ?)del	GRCh37 (hg19)		NC_000003.11	Chr3	4,241,683	4,278,356
nssv14106649	Submitted genomic		NC_000003.11:g.(?_ 4241683)_(4278356_ ?)del	GRCh37 (hg19)		NC_000003.11	Chr3	4,241,683	4,278,356
nssv14108577	Submitted genomic		NC_000003.11:g.(?_ 4241683)_(4278356_ ?)del	GRCh37 (hg19)		NC_000003.11	Chr3	4,241,683	4,278,356

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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