nsv3115311
- Organism: Homo sapiens
- Study:nstd145 (Lu et al. 2017)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:GRCh37 (hg19)
- Variant Calls:23
- Validation:Not tested
- Clinical Assertions: No
- Region Size:2,884
- Publication(s):Lu et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 449 SVs from 70 studies. See in: genome view
Overlapping variant regions from other studies: 449 SVs from 70 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3115311 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 190,019,513 | 190,022,396 |
| nsv3115311 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000003.11 | Chr3 | 189,737,302 | 189,740,185 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14103378 | deletion | sample2 | Oligo aCGH | Probe signal intensity | 30 |
| nssv14103425 | deletion | sample11 | Oligo aCGH | Probe signal intensity | 90 |
| nssv14103430 | deletion | sample12 | Oligo aCGH | Probe signal intensity | 35 |
| nssv14104243 | deletion | sample40 | Oligo aCGH | Probe signal intensity | 87 |
| nssv14104350 | deletion | sample57 | Oligo aCGH | Probe signal intensity | 34 |
| nssv14104370 | deletion | sample59 | Oligo aCGH | Probe signal intensity | 88 |
| nssv14104389 | deletion | sample61 | Oligo aCGH | Probe signal intensity | 81 |
| nssv14104490 | deletion | sample80 | Oligo aCGH | Probe signal intensity | 80 |
| nssv14105349 | deletion | sample104 | Oligo aCGH | Probe signal intensity | 49 |
| nssv14105359 | deletion | sample107 | Oligo aCGH | Probe signal intensity | 63 |
| nssv14105403 | deletion | sample115 | Oligo aCGH | Probe signal intensity | 60 |
| nssv14105911 | deletion | sample124 | Oligo aCGH | Probe signal intensity | 58 |
| nssv14105927 | deletion | sample127 | Oligo aCGH | Probe signal intensity | 60 |
| nssv14105955 | deletion | sample131 | Oligo aCGH | Probe signal intensity | 50 |
| nssv14106440 | deletion | sample147 | Oligo aCGH | Probe signal intensity | 78 |
| nssv14106594 | deletion | sample173 | Oligo aCGH | Probe signal intensity | 82 |
| nssv14106673 | deletion | sample187 | Oligo aCGH | Probe signal intensity | 58 |
| nssv14107759 | deletion | sample273 | Oligo aCGH | Probe signal intensity | 88 |
| nssv14108024 | deletion | sample322 | Oligo aCGH | Probe signal intensity | 79 |
| nssv14108255 | deletion | sample223 | Oligo aCGH | Probe signal intensity | 49 |
| nssv14108380 | deletion | sample244 | Oligo aCGH | Probe signal intensity | 74 |
| nssv14108535 | deletion | sample354 | Oligo aCGH | Probe signal intensity | 20 |
| nssv14108627 | deletion | sample369 | Oligo aCGH | Probe signal intensity | 84 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14103378 | Remapped | Perfect | NC_000003.12:g.(?_ 190019513)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,513 | 190,022,396 |
| nssv14103425 | Remapped | Perfect | NC_000003.12:g.(?_ 190019513)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,513 | 190,022,396 |
| nssv14103430 | Remapped | Perfect | NC_000003.12:g.(?_ 190019513)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,513 | 190,022,396 |
| nssv14104243 | Remapped | Perfect | NC_000003.12:g.(?_ 190019513)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,513 | 190,022,396 |
| nssv14104350 | Remapped | Perfect | NC_000003.12:g.(?_ 190019513)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,513 | 190,022,396 |
| nssv14104370 | Remapped | Perfect | NC_000003.12:g.(?_ 190019513)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,513 | 190,022,396 |
| nssv14104389 | Remapped | Perfect | NC_000003.12:g.(?_ 190019513)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,513 | 190,022,396 |
| nssv14104490 | Remapped | Perfect | NC_000003.12:g.(?_ 190019513)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,513 | 190,022,396 |
| nssv14105349 | Remapped | Perfect | NC_000003.12:g.(?_ 190019513)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,513 | 190,022,396 |
| nssv14105359 | Remapped | Perfect | NC_000003.12:g.(?_ 190019513)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,513 | 190,022,396 |
| nssv14105403 | Remapped | Perfect | NC_000003.12:g.(?_ 190019513)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,513 | 190,022,396 |
| nssv14105911 | Remapped | Perfect | NC_000003.12:g.(?_ 190019513)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,513 | 190,022,396 |
| nssv14105927 | Remapped | Perfect | NC_000003.12:g.(?_ 190019513)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,513 | 190,022,396 |
| nssv14105955 | Remapped | Perfect | NC_000003.12:g.(?_ 190019513)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,513 | 190,022,396 |
| nssv14106440 | Remapped | Perfect | NC_000003.12:g.(?_ 190019513)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,513 | 190,022,396 |
| nssv14106594 | Remapped | Perfect | NC_000003.12:g.(?_ 190019513)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,513 | 190,022,396 |
| nssv14106673 | Remapped | Perfect | NC_000003.12:g.(?_ 190019513)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,513 | 190,022,396 |
| nssv14107759 | Remapped | Perfect | NC_000003.12:g.(?_ 190019513)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,513 | 190,022,396 |
| nssv14108024 | Remapped | Perfect | NC_000003.12:g.(?_ 190019513)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,513 | 190,022,396 |
| nssv14108255 | Remapped | Perfect | NC_000003.12:g.(?_ 190019513)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,513 | 190,022,396 |
| nssv14108380 | Remapped | Perfect | NC_000003.12:g.(?_ 190019513)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,513 | 190,022,396 |
| nssv14108535 | Remapped | Perfect | NC_000003.12:g.(?_ 190019513)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,513 | 190,022,396 |
| nssv14108627 | Remapped | Perfect | NC_000003.12:g.(?_ 190019513)_(190022 396_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 190,019,513 | 190,022,396 |
| nssv14103378 | Submitted genomic | NC_000003.11:g.(?_ 189737302)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,302 | 189,740,185 | ||
| nssv14103425 | Submitted genomic | NC_000003.11:g.(?_ 189737302)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,302 | 189,740,185 | ||
| nssv14103430 | Submitted genomic | NC_000003.11:g.(?_ 189737302)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,302 | 189,740,185 | ||
| nssv14104243 | Submitted genomic | NC_000003.11:g.(?_ 189737302)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,302 | 189,740,185 | ||
| nssv14104350 | Submitted genomic | NC_000003.11:g.(?_ 189737302)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,302 | 189,740,185 | ||
| nssv14104370 | Submitted genomic | NC_000003.11:g.(?_ 189737302)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,302 | 189,740,185 | ||
| nssv14104389 | Submitted genomic | NC_000003.11:g.(?_ 189737302)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,302 | 189,740,185 | ||
| nssv14104490 | Submitted genomic | NC_000003.11:g.(?_ 189737302)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,302 | 189,740,185 | ||
| nssv14105349 | Submitted genomic | NC_000003.11:g.(?_ 189737302)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,302 | 189,740,185 | ||
| nssv14105359 | Submitted genomic | NC_000003.11:g.(?_ 189737302)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,302 | 189,740,185 | ||
| nssv14105403 | Submitted genomic | NC_000003.11:g.(?_ 189737302)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,302 | 189,740,185 | ||
| nssv14105911 | Submitted genomic | NC_000003.11:g.(?_ 189737302)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,302 | 189,740,185 | ||
| nssv14105927 | Submitted genomic | NC_000003.11:g.(?_ 189737302)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,302 | 189,740,185 | ||
| nssv14105955 | Submitted genomic | NC_000003.11:g.(?_ 189737302)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,302 | 189,740,185 | ||
| nssv14106440 | Submitted genomic | NC_000003.11:g.(?_ 189737302)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,302 | 189,740,185 | ||
| nssv14106594 | Submitted genomic | NC_000003.11:g.(?_ 189737302)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,302 | 189,740,185 | ||
| nssv14106673 | Submitted genomic | NC_000003.11:g.(?_ 189737302)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,302 | 189,740,185 | ||
| nssv14107759 | Submitted genomic | NC_000003.11:g.(?_ 189737302)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,302 | 189,740,185 | ||
| nssv14108024 | Submitted genomic | NC_000003.11:g.(?_ 189737302)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,302 | 189,740,185 | ||
| nssv14108255 | Submitted genomic | NC_000003.11:g.(?_ 189737302)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,302 | 189,740,185 | ||
| nssv14108380 | Submitted genomic | NC_000003.11:g.(?_ 189737302)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,302 | 189,740,185 | ||
| nssv14108535 | Submitted genomic | NC_000003.11:g.(?_ 189737302)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,302 | 189,740,185 | ||
| nssv14108627 | Submitted genomic | NC_000003.11:g.(?_ 189737302)_(189740 185_?)del | GRCh37 (hg19) | NC_000003.11 | Chr3 | 189,737,302 | 189,740,185 |