nsv3115596

Organism: Homo sapiens

Study:nstd145 (Lu et al. 2017)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:45
Validation:Not tested
Clinical Assertions: No
Region Size:5,075

Publication(s):Lu et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 314 SVs from 69 studies. See in: genome view

Remapped(Score: Perfect):149,246,269-149,251,343

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3115596	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nsv3115596	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000003.11	Chr3	148,964,056	148,969,130

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14103370	deletion	sample1	Oligo aCGH	Probe signal intensity	77
nssv14103490	deletion	sample24	Oligo aCGH	Probe signal intensity	48
nssv14104234	deletion	sample38	Oligo aCGH	Probe signal intensity	92
nssv14104328	deletion	sample53	Oligo aCGH	Probe signal intensity	59
nssv14104356	deletion	sample58	Oligo aCGH	Probe signal intensity	85
nssv14104392	deletion	sample62	Oligo aCGH	Probe signal intensity	54
nssv14104436	deletion	sample70	Oligo aCGH	Probe signal intensity	94
nssv14104446	deletion	sample71	Oligo aCGH	Probe signal intensity	91
nssv14104495	deletion	sample81	Oligo aCGH	Probe signal intensity	106
nssv14104507	deletion	sample83	Oligo aCGH	Probe signal intensity	88
nssv14104514	deletion	sample84	Oligo aCGH	Probe signal intensity	76
nssv14104523	deletion	sample87	Oligo aCGH	Probe signal intensity	74
nssv14105306	deletion	sample98	Oligo aCGH	Probe signal intensity	89
nssv14105315	deletion	sample99	Oligo aCGH	Probe signal intensity	74
nssv14105424	deletion	sample118	Oligo aCGH	Probe signal intensity	95
nssv14105442	deletion	sample121	Oligo aCGH	Probe signal intensity	25
nssv14105469	deletion	sample396	Oligo aCGH	Probe signal intensity	78
nssv14105591	deletion	sample419	Oligo aCGH	Probe signal intensity	76
nssv14105917	deletion	sample125	Oligo aCGH	Probe signal intensity	70
nssv14105936	deletion	sample128	Oligo aCGH	Probe signal intensity	79
nssv14105942	deletion	sample129	Oligo aCGH	Probe signal intensity	70
nssv14106401	deletion	sample142	Oligo aCGH	Probe signal intensity	89
nssv14106408	deletion	sample143	Oligo aCGH	Probe signal intensity	95
nssv14106483	deletion	sample154	Oligo aCGH	Probe signal intensity	79
nssv14106563	deletion	sample168	Oligo aCGH	Probe signal intensity	56
nssv14106606	deletion	sample175	Oligo aCGH	Probe signal intensity	65
nssv14106619	deletion	sample177	Oligo aCGH	Probe signal intensity	84
nssv14106665	deletion	sample186	Oligo aCGH	Probe signal intensity	82
nssv14106694	deletion	sample190	Oligo aCGH	Probe signal intensity	77
nssv14106733	deletion	sample196	Oligo aCGH	Probe signal intensity	72
nssv14107027	deletion	sample252	Oligo aCGH	Probe signal intensity	34
nssv14107058	deletion	sample259	Oligo aCGH	Probe signal intensity	86
nssv14107817	deletion	sample282	Oligo aCGH	Probe signal intensity	85
nssv14107975	deletion	sample313	Oligo aCGH	Probe signal intensity	80
nssv14107985	deletion	sample316	Oligo aCGH	Probe signal intensity	83
nssv14108065	deletion	sample331	Oligo aCGH	Probe signal intensity	100
nssv14108122	deletion	sample200	Oligo aCGH	Probe signal intensity	73
nssv14108249	deletion	sample223	Oligo aCGH	Probe signal intensity	49
nssv14108267	deletion	sample225	Oligo aCGH	Probe signal intensity	65
nssv14108320	deletion	sample234	Oligo aCGH	Probe signal intensity	93
nssv14108365	deletion	sample243	Oligo aCGH	Probe signal intensity	92
nssv14108581	deletion	sample362	Oligo aCGH	Probe signal intensity	70
nssv14108598	deletion	sample364	Oligo aCGH	Probe signal intensity	95
nssv14108637	deletion	sample371	Oligo aCGH	Probe signal intensity	73
nssv14108716	deletion	sample386	Oligo aCGH	Probe signal intensity	86

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14103370	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14103490	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14104234	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14104328	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14104356	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14104392	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14104436	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14104446	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14104495	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14104507	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14104514	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14104523	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14105306	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14105315	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14105424	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14105442	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14105469	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14105591	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14105917	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14105936	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14105942	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14106401	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14106408	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14106483	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14106563	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14106606	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14106619	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14106665	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14106694	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14106733	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14107027	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14107058	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14107817	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14107975	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14107985	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14108065	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14108122	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14108249	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14108267	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14108320	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14108365	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14108581	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14108598	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14108637	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14108716	Remapped	Perfect	NC_000003.12:g.(?_ 149246269)_(149251 343_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	149,246,269	149,251,343
nssv14103370	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14103490	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14104234	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14104328	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14104356	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14104392	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14104436	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14104446	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14104495	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14104507	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14104514	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14104523	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14105306	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14105315	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14105424	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14105442	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14105469	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14105591	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14105917	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14105936	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14105942	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14106401	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14106408	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14106483	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14106563	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14106606	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14106619	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14106665	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14106694	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14106733	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14107027	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14107058	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14107817	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14107975	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14107985	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14108065	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14108122	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14108249	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14108267	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14108320	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14108365	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14108581	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14108598	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14108637	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130
nssv14108716	Submitted genomic		NC_000003.11:g.(?_ 148964056)_(148969 130_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	148,964,056	148,969,130

dbVar

Database of genomic structural variation

nsv3115596

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Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant