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dbVar

Database of genomic structural variation

nsv3115624

Organism: Homo sapiens

Study:nstd145 (Lu et al. 2017)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:7
Validation:Not tested
Clinical Assertions: No
Region Size:3,099

Publication(s):Lu et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 198 SVs from 50 studies. See in: genome view

Remapped(Score: Perfect):33,615,411-33,618,509

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3115624	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000015.10	Chr15	33,615,411	33,618,509
nsv3115624	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000015.9	Chr15	33,907,612	33,910,710

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14096111	deletion	sample125	Oligo aCGH	Probe signal intensity	70
nssv14096197	deletion	sample163	Oligo aCGH	Probe signal intensity	93
nssv14097028	deletion	sample246	Oligo aCGH	Probe signal intensity	86
nssv14097089	deletion	sample292	Oligo aCGH	Probe signal intensity	69
nssv14097185	deletion	sample354	Oligo aCGH	Probe signal intensity	20
nssv14097551	deletion	sample217	Oligo aCGH	Probe signal intensity	80
nssv14097571	deletion	sample226	Oligo aCGH	Probe signal intensity	68

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14096111	Remapped	Perfect	NC_000015.10:g.(?_ 33615411)_(3361850 9_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	33,615,411	33,618,509
nssv14096197	Remapped	Perfect	NC_000015.10:g.(?_ 33615411)_(3361850 9_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	33,615,411	33,618,509
nssv14097028	Remapped	Perfect	NC_000015.10:g.(?_ 33615411)_(3361850 9_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	33,615,411	33,618,509
nssv14097089	Remapped	Perfect	NC_000015.10:g.(?_ 33615411)_(3361850 9_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	33,615,411	33,618,509
nssv14097185	Remapped	Perfect	NC_000015.10:g.(?_ 33615411)_(3361850 9_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	33,615,411	33,618,509
nssv14097551	Remapped	Perfect	NC_000015.10:g.(?_ 33615411)_(3361850 9_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	33,615,411	33,618,509
nssv14097571	Remapped	Perfect	NC_000015.10:g.(?_ 33615411)_(3361850 9_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	33,615,411	33,618,509
nssv14096111	Submitted genomic		NC_000015.9:g.(?_3 3907612)_(33910710 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	33,907,612	33,910,710
nssv14096197	Submitted genomic		NC_000015.9:g.(?_3 3907612)_(33910710 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	33,907,612	33,910,710
nssv14097028	Submitted genomic		NC_000015.9:g.(?_3 3907612)_(33910710 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	33,907,612	33,910,710
nssv14097089	Submitted genomic		NC_000015.9:g.(?_3 3907612)_(33910710 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	33,907,612	33,910,710
nssv14097185	Submitted genomic		NC_000015.9:g.(?_3 3907612)_(33910710 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	33,907,612	33,910,710
nssv14097551	Submitted genomic		NC_000015.9:g.(?_3 3907612)_(33910710 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	33,907,612	33,910,710
nssv14097571	Submitted genomic		NC_000015.9:g.(?_3 3907612)_(33910710 _?)del	GRCh37 (hg19)		NC_000015.9	Chr15	33,907,612	33,910,710

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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