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dbVar

Database of genomic structural variation

nsv3115673

Organism: Homo sapiens

Study:nstd145 (Lu et al. 2017)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:7
Validation:Not tested
Clinical Assertions: No
Region Size:5,470

Publication(s):Lu et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 655 SVs from 76 studies. See in: genome view

Remapped(Score: Perfect):3,928,520-3,933,989

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3115673	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000008.11	Chr8	3,928,520	3,933,989
nsv3115673	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000008.10	Chr8	3,786,042	3,791,511

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14085951	deletion	sample61	Oligo aCGH	Probe signal intensity	81
nssv14086283	deletion	sample274	Oligo aCGH	Probe signal intensity	73
nssv14086941	deletion	sample75	Oligo aCGH	Probe signal intensity	22
nssv14087002	deletion	sample92	Oligo aCGH	Probe signal intensity	53
nssv14087266	deletion	sample286	Oligo aCGH	Probe signal intensity	84
nssv14087392	deletion	sample320	Oligo aCGH	Probe signal intensity	63
nssv14087440	deletion	sample334	Oligo aCGH	Probe signal intensity	36

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14085951	Remapped	Perfect	NC_000008.11:g.(?_ 3928520)_(3933989_ ?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	3,928,520	3,933,989
nssv14086283	Remapped	Perfect	NC_000008.11:g.(?_ 3928520)_(3933989_ ?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	3,928,520	3,933,989
nssv14086941	Remapped	Perfect	NC_000008.11:g.(?_ 3928520)_(3933989_ ?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	3,928,520	3,933,989
nssv14087002	Remapped	Perfect	NC_000008.11:g.(?_ 3928520)_(3933989_ ?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	3,928,520	3,933,989
nssv14087266	Remapped	Perfect	NC_000008.11:g.(?_ 3928520)_(3933989_ ?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	3,928,520	3,933,989
nssv14087392	Remapped	Perfect	NC_000008.11:g.(?_ 3928520)_(3933989_ ?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	3,928,520	3,933,989
nssv14087440	Remapped	Perfect	NC_000008.11:g.(?_ 3928520)_(3933989_ ?)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	3,928,520	3,933,989
nssv14085951	Submitted genomic		NC_000008.10:g.(?_ 3786042)_(3791511_ ?)del	GRCh37 (hg19)		NC_000008.10	Chr8	3,786,042	3,791,511
nssv14086283	Submitted genomic		NC_000008.10:g.(?_ 3786042)_(3791511_ ?)del	GRCh37 (hg19)		NC_000008.10	Chr8	3,786,042	3,791,511
nssv14086941	Submitted genomic		NC_000008.10:g.(?_ 3786042)_(3791511_ ?)del	GRCh37 (hg19)		NC_000008.10	Chr8	3,786,042	3,791,511
nssv14087002	Submitted genomic		NC_000008.10:g.(?_ 3786042)_(3791511_ ?)del	GRCh37 (hg19)		NC_000008.10	Chr8	3,786,042	3,791,511
nssv14087266	Submitted genomic		NC_000008.10:g.(?_ 3786042)_(3791511_ ?)del	GRCh37 (hg19)		NC_000008.10	Chr8	3,786,042	3,791,511
nssv14087392	Submitted genomic		NC_000008.10:g.(?_ 3786042)_(3791511_ ?)del	GRCh37 (hg19)		NC_000008.10	Chr8	3,786,042	3,791,511
nssv14087440	Submitted genomic		NC_000008.10:g.(?_ 3786042)_(3791511_ ?)del	GRCh37 (hg19)		NC_000008.10	Chr8	3,786,042	3,791,511

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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