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dbVar

Database of genomic structural variation

nsv3115682

Organism: Homo sapiens

Study:nstd145 (Lu et al. 2017)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:42,530

Publication(s):Lu et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 700 SVs from 82 studies. See in: genome view

Remapped(Score: Perfect):49,690,845-49,733,359

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3115682	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	49,690,845	49,733,359
nsv3115682	Remapped	Good	GRCh38.p12	PATCHES	Second Pass	NW_019805495.1	Chr11\|NW_0 19805495.1	154,979	197,508
nsv3115682	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000011.9	Chr11	49,712,397	49,754,911

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14089966	deletion	sample4	Oligo aCGH	Probe signal intensity	66
nssv14091805	deletion	sample187	Oligo aCGH	Probe signal intensity	58

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14089966	Remapped	Good	NW_019805495.1:g.( ?_154979)_(197508_ ?)del	GRCh38.p12	Second Pass	NW_019805495.1	Chr11\|NW_0 19805495.1	154,979	197,508
nssv14091805	Remapped	Good	NW_019805495.1:g.( ?_154979)_(197508_ ?)del	GRCh38.p12	Second Pass	NW_019805495.1	Chr11\|NW_0 19805495.1	154,979	197,508
nssv14089966	Remapped	Perfect	NC_000011.10:g.(?_ 49690845)_(4973335 9_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	49,690,845	49,733,359
nssv14091805	Remapped	Perfect	NC_000011.10:g.(?_ 49690845)_(4973335 9_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	49,690,845	49,733,359
nssv14089966	Submitted genomic		NC_000011.9:g.(?_4 9712397)_(49754911 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	49,712,397	49,754,911
nssv14091805	Submitted genomic		NC_000011.9:g.(?_4 9712397)_(49754911 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	49,712,397	49,754,911

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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