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dbVar

Database of genomic structural variation

nsv3115834

Organism: Homo sapiens

Study:nstd145 (Lu et al. 2017)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:9
Validation:Not tested
Clinical Assertions: No
Region Size:5,178

Publication(s):Lu et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 186 SVs from 41 studies. See in: genome view

Remapped(Score: Perfect):234,567,808-234,572,985

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3115834	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	234,567,808	234,572,985
nsv3115834	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000001.10	Chr1	234,703,554	234,708,731

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14082906	deletion	sample171	Oligo aCGH	Probe signal intensity	83
nssv14083295	deletion	sample187	Oligo aCGH	Probe signal intensity	58
nssv14083942	deletion	sample15	Oligo aCGH	Probe signal intensity	87
nssv14085032	deletion	sample19	Oligo aCGH	Probe signal intensity	101
nssv14089560	deletion	sample239	Oligo aCGH	Probe signal intensity	46
nssv14092479	deletion	sample300	Oligo aCGH	Probe signal intensity	97
nssv14094632	deletion	sample128	Oligo aCGH	Probe signal intensity	79
nssv14106012	deletion	sample58	Oligo aCGH	Probe signal intensity	85
nssv14108619	deletion	sample96	Oligo aCGH	Probe signal intensity	82

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14082906	Remapped	Perfect	NC_000001.11:g.(?_ 234567808)_(234572 985_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	234,567,808	234,572,985
nssv14083295	Remapped	Perfect	NC_000001.11:g.(?_ 234567808)_(234572 985_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	234,567,808	234,572,985
nssv14083942	Remapped	Perfect	NC_000001.11:g.(?_ 234567808)_(234572 985_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	234,567,808	234,572,985
nssv14085032	Remapped	Perfect	NC_000001.11:g.(?_ 234567808)_(234572 985_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	234,567,808	234,572,985
nssv14089560	Remapped	Perfect	NC_000001.11:g.(?_ 234567808)_(234572 985_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	234,567,808	234,572,985
nssv14092479	Remapped	Perfect	NC_000001.11:g.(?_ 234567808)_(234572 985_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	234,567,808	234,572,985
nssv14094632	Remapped	Perfect	NC_000001.11:g.(?_ 234567808)_(234572 985_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	234,567,808	234,572,985
nssv14106012	Remapped	Perfect	NC_000001.11:g.(?_ 234567808)_(234572 985_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	234,567,808	234,572,985
nssv14108619	Remapped	Perfect	NC_000001.11:g.(?_ 234567808)_(234572 985_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	234,567,808	234,572,985
nssv14082906	Submitted genomic		NC_000001.10:g.(?_ 234703554)_(234708 731_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	234,703,554	234,708,731
nssv14083295	Submitted genomic		NC_000001.10:g.(?_ 234703554)_(234708 731_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	234,703,554	234,708,731
nssv14083942	Submitted genomic		NC_000001.10:g.(?_ 234703554)_(234708 731_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	234,703,554	234,708,731
nssv14085032	Submitted genomic		NC_000001.10:g.(?_ 234703554)_(234708 731_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	234,703,554	234,708,731
nssv14089560	Submitted genomic		NC_000001.10:g.(?_ 234703554)_(234708 731_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	234,703,554	234,708,731
nssv14092479	Submitted genomic		NC_000001.10:g.(?_ 234703554)_(234708 731_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	234,703,554	234,708,731
nssv14094632	Submitted genomic		NC_000001.10:g.(?_ 234703554)_(234708 731_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	234,703,554	234,708,731
nssv14106012	Submitted genomic		NC_000001.10:g.(?_ 234703554)_(234708 731_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	234,703,554	234,708,731
nssv14108619	Submitted genomic		NC_000001.10:g.(?_ 234703554)_(234708 731_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	234,703,554	234,708,731

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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