nsv3115886
- Organism: Homo sapiens
- Study:nstd145 (Lu et al. 2017)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:GRCh37 (hg19)
- Variant Calls:11
- Validation:Not tested
- Clinical Assertions: No
- Region Size:4,046
- Publication(s):Lu et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 362 SVs from 63 studies. See in: genome view
Overlapping variant regions from other studies: 49 SVs from 25 studies. See in: genome view
Overlapping variant regions from other studies: 362 SVs from 63 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3115886 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000016.10 | Chr16 | 17,381,872 | 17,385,917 |
| nsv3115886 | Remapped | Perfect | GRCh38.p12 | PATCHES | Second Pass | NW_019805500.1 | Chr16|NW_0 19805500.1 | 383,133 | 387,178 |
| nsv3115886 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000016.9 | Chr16 | 17,475,729 | 17,479,774 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14096349 | deletion | sample236 | Oligo aCGH | Probe signal intensity | 62 |
| nssv14096439 | deletion | sample285 | Oligo aCGH | Probe signal intensity | 67 |
| nssv14096468 | deletion | sample302 | Oligo aCGH | Probe signal intensity | 85 |
| nssv14096505 | deletion | sample321 | Oligo aCGH | Probe signal intensity | 74 |
| nssv14096506 | deletion | sample322 | Oligo aCGH | Probe signal intensity | 79 |
| nssv14096512 | deletion | sample324 | Oligo aCGH | Probe signal intensity | 54 |
| nssv14096522 | deletion | sample329 | Oligo aCGH | Probe signal intensity | 78 |
| nssv14098418 | deletion | sample110 | Oligo aCGH | Probe signal intensity | 72 |
| nssv14099215 | deletion | sample190 | Oligo aCGH | Probe signal intensity | 77 |
| nssv14099224 | deletion | sample196 | Oligo aCGH | Probe signal intensity | 72 |
| nssv14099250 | deletion | sample210 | Oligo aCGH | Probe signal intensity | 58 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14096349 | Remapped | Perfect | NW_019805500.1:g.( ?_383133)_(387178_ ?)del | GRCh38.p12 | Second Pass | NW_019805500.1 | Chr16|NW_0 19805500.1 | 383,133 | 387,178 |
| nssv14096439 | Remapped | Perfect | NW_019805500.1:g.( ?_383133)_(387178_ ?)del | GRCh38.p12 | Second Pass | NW_019805500.1 | Chr16|NW_0 19805500.1 | 383,133 | 387,178 |
| nssv14096468 | Remapped | Perfect | NW_019805500.1:g.( ?_383133)_(387178_ ?)del | GRCh38.p12 | Second Pass | NW_019805500.1 | Chr16|NW_0 19805500.1 | 383,133 | 387,178 |
| nssv14096505 | Remapped | Perfect | NW_019805500.1:g.( ?_383133)_(387178_ ?)del | GRCh38.p12 | Second Pass | NW_019805500.1 | Chr16|NW_0 19805500.1 | 383,133 | 387,178 |
| nssv14096506 | Remapped | Perfect | NW_019805500.1:g.( ?_383133)_(387178_ ?)del | GRCh38.p12 | Second Pass | NW_019805500.1 | Chr16|NW_0 19805500.1 | 383,133 | 387,178 |
| nssv14096512 | Remapped | Perfect | NW_019805500.1:g.( ?_383133)_(387178_ ?)del | GRCh38.p12 | Second Pass | NW_019805500.1 | Chr16|NW_0 19805500.1 | 383,133 | 387,178 |
| nssv14096522 | Remapped | Perfect | NW_019805500.1:g.( ?_383133)_(387178_ ?)del | GRCh38.p12 | Second Pass | NW_019805500.1 | Chr16|NW_0 19805500.1 | 383,133 | 387,178 |
| nssv14098418 | Remapped | Perfect | NW_019805500.1:g.( ?_383133)_(387178_ ?)del | GRCh38.p12 | Second Pass | NW_019805500.1 | Chr16|NW_0 19805500.1 | 383,133 | 387,178 |
| nssv14099215 | Remapped | Perfect | NW_019805500.1:g.( ?_383133)_(387178_ ?)del | GRCh38.p12 | Second Pass | NW_019805500.1 | Chr16|NW_0 19805500.1 | 383,133 | 387,178 |
| nssv14099224 | Remapped | Perfect | NW_019805500.1:g.( ?_383133)_(387178_ ?)del | GRCh38.p12 | Second Pass | NW_019805500.1 | Chr16|NW_0 19805500.1 | 383,133 | 387,178 |
| nssv14099250 | Remapped | Perfect | NW_019805500.1:g.( ?_383133)_(387178_ ?)del | GRCh38.p12 | Second Pass | NW_019805500.1 | Chr16|NW_0 19805500.1 | 383,133 | 387,178 |
| nssv14096349 | Remapped | Perfect | NC_000016.10:g.(?_ 17381872)_(1738591 7_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 17,381,872 | 17,385,917 |
| nssv14096439 | Remapped | Perfect | NC_000016.10:g.(?_ 17381872)_(1738591 7_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 17,381,872 | 17,385,917 |
| nssv14096468 | Remapped | Perfect | NC_000016.10:g.(?_ 17381872)_(1738591 7_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 17,381,872 | 17,385,917 |
| nssv14096505 | Remapped | Perfect | NC_000016.10:g.(?_ 17381872)_(1738591 7_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 17,381,872 | 17,385,917 |
| nssv14096506 | Remapped | Perfect | NC_000016.10:g.(?_ 17381872)_(1738591 7_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 17,381,872 | 17,385,917 |
| nssv14096512 | Remapped | Perfect | NC_000016.10:g.(?_ 17381872)_(1738591 7_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 17,381,872 | 17,385,917 |
| nssv14096522 | Remapped | Perfect | NC_000016.10:g.(?_ 17381872)_(1738591 7_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 17,381,872 | 17,385,917 |
| nssv14098418 | Remapped | Perfect | NC_000016.10:g.(?_ 17381872)_(1738591 7_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 17,381,872 | 17,385,917 |
| nssv14099215 | Remapped | Perfect | NC_000016.10:g.(?_ 17381872)_(1738591 7_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 17,381,872 | 17,385,917 |
| nssv14099224 | Remapped | Perfect | NC_000016.10:g.(?_ 17381872)_(1738591 7_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 17,381,872 | 17,385,917 |
| nssv14099250 | Remapped | Perfect | NC_000016.10:g.(?_ 17381872)_(1738591 7_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 17,381,872 | 17,385,917 |
| nssv14096349 | Submitted genomic | NC_000016.9:g.(?_1 7475729)_(17479774 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 17,475,729 | 17,479,774 | ||
| nssv14096439 | Submitted genomic | NC_000016.9:g.(?_1 7475729)_(17479774 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 17,475,729 | 17,479,774 | ||
| nssv14096468 | Submitted genomic | NC_000016.9:g.(?_1 7475729)_(17479774 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 17,475,729 | 17,479,774 | ||
| nssv14096505 | Submitted genomic | NC_000016.9:g.(?_1 7475729)_(17479774 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 17,475,729 | 17,479,774 | ||
| nssv14096506 | Submitted genomic | NC_000016.9:g.(?_1 7475729)_(17479774 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 17,475,729 | 17,479,774 | ||
| nssv14096512 | Submitted genomic | NC_000016.9:g.(?_1 7475729)_(17479774 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 17,475,729 | 17,479,774 | ||
| nssv14096522 | Submitted genomic | NC_000016.9:g.(?_1 7475729)_(17479774 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 17,475,729 | 17,479,774 | ||
| nssv14098418 | Submitted genomic | NC_000016.9:g.(?_1 7475729)_(17479774 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 17,475,729 | 17,479,774 | ||
| nssv14099215 | Submitted genomic | NC_000016.9:g.(?_1 7475729)_(17479774 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 17,475,729 | 17,479,774 | ||
| nssv14099224 | Submitted genomic | NC_000016.9:g.(?_1 7475729)_(17479774 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 17,475,729 | 17,479,774 | ||
| nssv14099250 | Submitted genomic | NC_000016.9:g.(?_1 7475729)_(17479774 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 17,475,729 | 17,479,774 |