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dbVar

Database of genomic structural variation

nsv3115889

Organism: Homo sapiens

Study:nstd145 (Lu et al. 2017)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:32,376

Publication(s):Lu et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 946 SVs from 81 studies. See in: genome view

Remapped(Score: Perfect):1,580,947-1,613,322

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3115889	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000020.11	Chr20	1,580,947	1,613,322
nsv3115889	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000020.10	Chr20	1,561,593	1,593,968

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14099934	deletion	sample209	Oligo aCGH	Probe signal intensity	62
nssv14099985	deletion	sample247	Oligo aCGH	Probe signal intensity	21
nssv14100704	deletion	sample328	Oligo aCGH	Probe signal intensity	70
nssv14100737	deletion	sample352	Oligo aCGH	Probe signal intensity	18
nssv14100739	deletion	sample356	Oligo aCGH	Probe signal intensity	27
nssv14100787	deletion	sample389	Oligo aCGH	Probe signal intensity	21

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14099934	Remapped	Perfect	NC_000020.11:g.(?_ 1580947)_(1613322_ ?)del	GRCh38.p12	First Pass	NC_000020.11	Chr20	1,580,947	1,613,322
nssv14099985	Remapped	Perfect	NC_000020.11:g.(?_ 1580947)_(1613322_ ?)del	GRCh38.p12	First Pass	NC_000020.11	Chr20	1,580,947	1,613,322
nssv14100704	Remapped	Perfect	NC_000020.11:g.(?_ 1580947)_(1613322_ ?)del	GRCh38.p12	First Pass	NC_000020.11	Chr20	1,580,947	1,613,322
nssv14100737	Remapped	Perfect	NC_000020.11:g.(?_ 1580947)_(1613322_ ?)del	GRCh38.p12	First Pass	NC_000020.11	Chr20	1,580,947	1,613,322
nssv14100739	Remapped	Perfect	NC_000020.11:g.(?_ 1580947)_(1613322_ ?)del	GRCh38.p12	First Pass	NC_000020.11	Chr20	1,580,947	1,613,322
nssv14100787	Remapped	Perfect	NC_000020.11:g.(?_ 1580947)_(1613322_ ?)del	GRCh38.p12	First Pass	NC_000020.11	Chr20	1,580,947	1,613,322
nssv14099934	Submitted genomic		NC_000020.10:g.(?_ 1561593)_(1593968_ ?)del	GRCh37 (hg19)		NC_000020.10	Chr20	1,561,593	1,593,968
nssv14099985	Submitted genomic		NC_000020.10:g.(?_ 1561593)_(1593968_ ?)del	GRCh37 (hg19)		NC_000020.10	Chr20	1,561,593	1,593,968
nssv14100704	Submitted genomic		NC_000020.10:g.(?_ 1561593)_(1593968_ ?)del	GRCh37 (hg19)		NC_000020.10	Chr20	1,561,593	1,593,968
nssv14100737	Submitted genomic		NC_000020.10:g.(?_ 1561593)_(1593968_ ?)del	GRCh37 (hg19)		NC_000020.10	Chr20	1,561,593	1,593,968
nssv14100739	Submitted genomic		NC_000020.10:g.(?_ 1561593)_(1593968_ ?)del	GRCh37 (hg19)		NC_000020.10	Chr20	1,561,593	1,593,968
nssv14100787	Submitted genomic		NC_000020.10:g.(?_ 1561593)_(1593968_ ?)del	GRCh37 (hg19)		NC_000020.10	Chr20	1,561,593	1,593,968

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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