nsv3115987
- Organism: Homo sapiens
- Study:nstd145 (Lu et al. 2017)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:GRCh37 (hg19)
- Variant Calls:16
- Validation:Not tested
- Clinical Assertions: No
- Region Size:7,051
- Publication(s):Lu et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1105 SVs from 83 studies. See in: genome view
Overlapping variant regions from other studies: 1105 SVs from 83 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3115987 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 69,081,896 | 69,088,946 |
| nsv3115987 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000018.9 | Chr18 | 66,749,133 | 66,756,183 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14099399 | deletion | sample23 | Oligo aCGH | Probe signal intensity | 60 |
| nssv14099413 | deletion | sample30 | Oligo aCGH | Probe signal intensity | 21 |
| nssv14099429 | deletion | sample40 | Oligo aCGH | Probe signal intensity | 87 |
| nssv14099531 | deletion | sample96 | Oligo aCGH | Probe signal intensity | 82 |
| nssv14099555 | deletion | sample108 | Oligo aCGH | Probe signal intensity | 66 |
| nssv14099565 | deletion | sample114 | Oligo aCGH | Probe signal intensity | 35 |
| nssv14099568 | deletion | sample116 | Oligo aCGH | Probe signal intensity | 107 |
| nssv14100008 | deletion | sample188 | Oligo aCGH | Probe signal intensity | 83 |
| nssv14100029 | deletion | sample200 | Oligo aCGH | Probe signal intensity | 73 |
| nssv14100058 | deletion | sample218 | Oligo aCGH | Probe signal intensity | 76 |
| nssv14100091 | deletion | sample238 | Oligo aCGH | Probe signal intensity | 68 |
| nssv14100126 | deletion | sample272 | Oligo aCGH | Probe signal intensity | 54 |
| nssv14100134 | deletion | sample274 | Oligo aCGH | Probe signal intensity | 73 |
| nssv14100232 | deletion | sample329 | Oligo aCGH | Probe signal intensity | 78 |
| nssv14100261 | deletion | sample361 | Oligo aCGH | Probe signal intensity | 80 |
| nssv14100974 | deletion | sample418 | Oligo aCGH | Probe signal intensity | 83 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14099399 | Remapped | Perfect | NC_000018.10:g.(?_ 69081896)_(6908894 6_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 69,081,896 | 69,088,946 |
| nssv14099413 | Remapped | Perfect | NC_000018.10:g.(?_ 69081896)_(6908894 6_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 69,081,896 | 69,088,946 |
| nssv14099429 | Remapped | Perfect | NC_000018.10:g.(?_ 69081896)_(6908894 6_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 69,081,896 | 69,088,946 |
| nssv14099531 | Remapped | Perfect | NC_000018.10:g.(?_ 69081896)_(6908894 6_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 69,081,896 | 69,088,946 |
| nssv14099555 | Remapped | Perfect | NC_000018.10:g.(?_ 69081896)_(6908894 6_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 69,081,896 | 69,088,946 |
| nssv14099565 | Remapped | Perfect | NC_000018.10:g.(?_ 69081896)_(6908894 6_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 69,081,896 | 69,088,946 |
| nssv14099568 | Remapped | Perfect | NC_000018.10:g.(?_ 69081896)_(6908894 6_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 69,081,896 | 69,088,946 |
| nssv14100008 | Remapped | Perfect | NC_000018.10:g.(?_ 69081896)_(6908894 6_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 69,081,896 | 69,088,946 |
| nssv14100029 | Remapped | Perfect | NC_000018.10:g.(?_ 69081896)_(6908894 6_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 69,081,896 | 69,088,946 |
| nssv14100058 | Remapped | Perfect | NC_000018.10:g.(?_ 69081896)_(6908894 6_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 69,081,896 | 69,088,946 |
| nssv14100091 | Remapped | Perfect | NC_000018.10:g.(?_ 69081896)_(6908894 6_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 69,081,896 | 69,088,946 |
| nssv14100126 | Remapped | Perfect | NC_000018.10:g.(?_ 69081896)_(6908894 6_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 69,081,896 | 69,088,946 |
| nssv14100134 | Remapped | Perfect | NC_000018.10:g.(?_ 69081896)_(6908894 6_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 69,081,896 | 69,088,946 |
| nssv14100232 | Remapped | Perfect | NC_000018.10:g.(?_ 69081896)_(6908894 6_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 69,081,896 | 69,088,946 |
| nssv14100261 | Remapped | Perfect | NC_000018.10:g.(?_ 69081896)_(6908894 6_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 69,081,896 | 69,088,946 |
| nssv14100974 | Remapped | Perfect | NC_000018.10:g.(?_ 69081896)_(6908894 6_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 69,081,896 | 69,088,946 |
| nssv14099399 | Submitted genomic | NC_000018.9:g.(?_6 6749133)_(66756183 _?)del | GRCh37 (hg19) | NC_000018.9 | Chr18 | 66,749,133 | 66,756,183 | ||
| nssv14099413 | Submitted genomic | NC_000018.9:g.(?_6 6749133)_(66756183 _?)del | GRCh37 (hg19) | NC_000018.9 | Chr18 | 66,749,133 | 66,756,183 | ||
| nssv14099429 | Submitted genomic | NC_000018.9:g.(?_6 6749133)_(66756183 _?)del | GRCh37 (hg19) | NC_000018.9 | Chr18 | 66,749,133 | 66,756,183 | ||
| nssv14099531 | Submitted genomic | NC_000018.9:g.(?_6 6749133)_(66756183 _?)del | GRCh37 (hg19) | NC_000018.9 | Chr18 | 66,749,133 | 66,756,183 | ||
| nssv14099555 | Submitted genomic | NC_000018.9:g.(?_6 6749133)_(66756183 _?)del | GRCh37 (hg19) | NC_000018.9 | Chr18 | 66,749,133 | 66,756,183 | ||
| nssv14099565 | Submitted genomic | NC_000018.9:g.(?_6 6749133)_(66756183 _?)del | GRCh37 (hg19) | NC_000018.9 | Chr18 | 66,749,133 | 66,756,183 | ||
| nssv14099568 | Submitted genomic | NC_000018.9:g.(?_6 6749133)_(66756183 _?)del | GRCh37 (hg19) | NC_000018.9 | Chr18 | 66,749,133 | 66,756,183 | ||
| nssv14100008 | Submitted genomic | NC_000018.9:g.(?_6 6749133)_(66756183 _?)del | GRCh37 (hg19) | NC_000018.9 | Chr18 | 66,749,133 | 66,756,183 | ||
| nssv14100029 | Submitted genomic | NC_000018.9:g.(?_6 6749133)_(66756183 _?)del | GRCh37 (hg19) | NC_000018.9 | Chr18 | 66,749,133 | 66,756,183 | ||
| nssv14100058 | Submitted genomic | NC_000018.9:g.(?_6 6749133)_(66756183 _?)del | GRCh37 (hg19) | NC_000018.9 | Chr18 | 66,749,133 | 66,756,183 | ||
| nssv14100091 | Submitted genomic | NC_000018.9:g.(?_6 6749133)_(66756183 _?)del | GRCh37 (hg19) | NC_000018.9 | Chr18 | 66,749,133 | 66,756,183 | ||
| nssv14100126 | Submitted genomic | NC_000018.9:g.(?_6 6749133)_(66756183 _?)del | GRCh37 (hg19) | NC_000018.9 | Chr18 | 66,749,133 | 66,756,183 | ||
| nssv14100134 | Submitted genomic | NC_000018.9:g.(?_6 6749133)_(66756183 _?)del | GRCh37 (hg19) | NC_000018.9 | Chr18 | 66,749,133 | 66,756,183 | ||
| nssv14100232 | Submitted genomic | NC_000018.9:g.(?_6 6749133)_(66756183 _?)del | GRCh37 (hg19) | NC_000018.9 | Chr18 | 66,749,133 | 66,756,183 | ||
| nssv14100261 | Submitted genomic | NC_000018.9:g.(?_6 6749133)_(66756183 _?)del | GRCh37 (hg19) | NC_000018.9 | Chr18 | 66,749,133 | 66,756,183 | ||
| nssv14100974 | Submitted genomic | NC_000018.9:g.(?_6 6749133)_(66756183 _?)del | GRCh37 (hg19) | NC_000018.9 | Chr18 | 66,749,133 | 66,756,183 |