nsv3116114
- Organism: Homo sapiens
- Study:nstd145 (Lu et al. 2017)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:GRCh37 (hg19)
- Variant Calls:4
- Validation:Not tested
- Clinical Assertions: No
- Region Size:335,357
- Publication(s):Lu et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 3996 SVs from 103 studies. See in: genome view
Overlapping variant regions from other studies: 4000 SVs from 103 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3116114 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 11,734,260 | 12,069,616 |
| nsv3116114 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000009.11 | Chr9 | 11,734,260 | 12,069,616 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14088479 | deletion | sample35 | Oligo aCGH | Probe signal intensity | 54 |
| nssv14089487 | deletion | sample47 | Oligo aCGH | Probe signal intensity | 77 |
| nssv14089613 | deletion | sample102 | Oligo aCGH | Probe signal intensity | 95 |
| nssv14090808 | deletion | sample187 | Oligo aCGH | Probe signal intensity | 58 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14088479 | Remapped | Perfect | NC_000009.12:g.(?_ 11734260)_(1206961 6_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,734,260 | 12,069,616 |
| nssv14089487 | Remapped | Perfect | NC_000009.12:g.(?_ 11734260)_(1206961 6_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,734,260 | 12,069,616 |
| nssv14089613 | Remapped | Perfect | NC_000009.12:g.(?_ 11734260)_(1206961 6_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,734,260 | 12,069,616 |
| nssv14090808 | Remapped | Perfect | NC_000009.12:g.(?_ 11734260)_(1206961 6_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,734,260 | 12,069,616 |
| nssv14088479 | Submitted genomic | NC_000009.11:g.(?_ 11734260)_(1206961 6_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 11,734,260 | 12,069,616 | ||
| nssv14089487 | Submitted genomic | NC_000009.11:g.(?_ 11734260)_(1206961 6_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 11,734,260 | 12,069,616 | ||
| nssv14089613 | Submitted genomic | NC_000009.11:g.(?_ 11734260)_(1206961 6_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 11,734,260 | 12,069,616 | ||
| nssv14090808 | Submitted genomic | NC_000009.11:g.(?_ 11734260)_(1206961 6_?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 11,734,260 | 12,069,616 |