nsv3116345

Organism: Homo sapiens

Study:nstd145 (Lu et al. 2017)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:23
Validation:Not tested
Clinical Assertions: No
Region Size:3,806

Publication(s):Lu et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 268 SVs from 53 studies. See in: genome view

Remapped(Score: Perfect):58,864,687-58,868,492

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3116345	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	58,864,687	58,868,492
nsv3116345	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000011.9	Chr11	58,632,160	58,635,965

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14089978	deletion	sample6	Oligo aCGH	Probe signal intensity	85
nssv14090227	deletion	sample389	Oligo aCGH	Probe signal intensity	21
nssv14090232	deletion	sample391	Oligo aCGH	Probe signal intensity	81
nssv14090280	deletion	sample405	Oligo aCGH	Probe signal intensity	21
nssv14090294	deletion	sample412	Oligo aCGH	Probe signal intensity	68
nssv14090303	deletion	sample418	Oligo aCGH	Probe signal intensity	83
nssv14090878	deletion	sample82	Oligo aCGH	Probe signal intensity	72
nssv14090931	deletion	sample100	Oligo aCGH	Probe signal intensity	75
nssv14090967	deletion	sample113	Oligo aCGH	Probe signal intensity	90
nssv14091020	deletion	sample132	Oligo aCGH	Probe signal intensity	11
nssv14091035	deletion	sample137	Oligo aCGH	Probe signal intensity	82
nssv14091054	deletion	sample143	Oligo aCGH	Probe signal intensity	95
nssv14091085	deletion	sample45	Oligo aCGH	Probe signal intensity	79
nssv14091710	deletion	sample152	Oligo aCGH	Probe signal intensity	85
nssv14091728	deletion	sample158	Oligo aCGH	Probe signal intensity	80
nssv14091733	deletion	sample160	Oligo aCGH	Probe signal intensity	90
nssv14091869	deletion	sample214	Oligo aCGH	Probe signal intensity	60
nssv14091872	deletion	sample218	Oligo aCGH	Probe signal intensity	76
nssv14092012	deletion	sample273	Oligo aCGH	Probe signal intensity	88
nssv14093070	deletion	sample295	Oligo aCGH	Probe signal intensity	77
nssv14093138	deletion	sample321	Oligo aCGH	Probe signal intensity	74
nssv14093191	deletion	sample345	Oligo aCGH	Probe signal intensity	83
nssv14093218	deletion	sample359	Oligo aCGH	Probe signal intensity	103

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14089978	Remapped	Perfect	NC_000011.10:g.(?_ 58864687)_(5886849 2_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	58,864,687	58,868,492
nssv14090227	Remapped	Perfect	NC_000011.10:g.(?_ 58864687)_(5886849 2_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	58,864,687	58,868,492
nssv14090232	Remapped	Perfect	NC_000011.10:g.(?_ 58864687)_(5886849 2_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	58,864,687	58,868,492
nssv14090280	Remapped	Perfect	NC_000011.10:g.(?_ 58864687)_(5886849 2_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	58,864,687	58,868,492
nssv14090294	Remapped	Perfect	NC_000011.10:g.(?_ 58864687)_(5886849 2_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	58,864,687	58,868,492
nssv14090303	Remapped	Perfect	NC_000011.10:g.(?_ 58864687)_(5886849 2_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	58,864,687	58,868,492
nssv14090878	Remapped	Perfect	NC_000011.10:g.(?_ 58864687)_(5886849 2_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	58,864,687	58,868,492
nssv14090931	Remapped	Perfect	NC_000011.10:g.(?_ 58864687)_(5886849 2_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	58,864,687	58,868,492
nssv14090967	Remapped	Perfect	NC_000011.10:g.(?_ 58864687)_(5886849 2_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	58,864,687	58,868,492
nssv14091020	Remapped	Perfect	NC_000011.10:g.(?_ 58864687)_(5886849 2_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	58,864,687	58,868,492
nssv14091035	Remapped	Perfect	NC_000011.10:g.(?_ 58864687)_(5886849 2_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	58,864,687	58,868,492
nssv14091054	Remapped	Perfect	NC_000011.10:g.(?_ 58864687)_(5886849 2_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	58,864,687	58,868,492
nssv14091085	Remapped	Perfect	NC_000011.10:g.(?_ 58864687)_(5886849 2_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	58,864,687	58,868,492
nssv14091710	Remapped	Perfect	NC_000011.10:g.(?_ 58864687)_(5886849 2_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	58,864,687	58,868,492
nssv14091728	Remapped	Perfect	NC_000011.10:g.(?_ 58864687)_(5886849 2_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	58,864,687	58,868,492
nssv14091733	Remapped	Perfect	NC_000011.10:g.(?_ 58864687)_(5886849 2_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	58,864,687	58,868,492
nssv14091869	Remapped	Perfect	NC_000011.10:g.(?_ 58864687)_(5886849 2_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	58,864,687	58,868,492
nssv14091872	Remapped	Perfect	NC_000011.10:g.(?_ 58864687)_(5886849 2_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	58,864,687	58,868,492
nssv14092012	Remapped	Perfect	NC_000011.10:g.(?_ 58864687)_(5886849 2_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	58,864,687	58,868,492
nssv14093070	Remapped	Perfect	NC_000011.10:g.(?_ 58864687)_(5886849 2_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	58,864,687	58,868,492
nssv14093138	Remapped	Perfect	NC_000011.10:g.(?_ 58864687)_(5886849 2_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	58,864,687	58,868,492
nssv14093191	Remapped	Perfect	NC_000011.10:g.(?_ 58864687)_(5886849 2_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	58,864,687	58,868,492
nssv14093218	Remapped	Perfect	NC_000011.10:g.(?_ 58864687)_(5886849 2_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	58,864,687	58,868,492
nssv14089978	Submitted genomic		NC_000011.9:g.(?_5 8632160)_(58635965 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	58,632,160	58,635,965
nssv14090227	Submitted genomic		NC_000011.9:g.(?_5 8632160)_(58635965 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	58,632,160	58,635,965
nssv14090232	Submitted genomic		NC_000011.9:g.(?_5 8632160)_(58635965 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	58,632,160	58,635,965
nssv14090280	Submitted genomic		NC_000011.9:g.(?_5 8632160)_(58635965 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	58,632,160	58,635,965
nssv14090294	Submitted genomic		NC_000011.9:g.(?_5 8632160)_(58635965 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	58,632,160	58,635,965
nssv14090303	Submitted genomic		NC_000011.9:g.(?_5 8632160)_(58635965 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	58,632,160	58,635,965
nssv14090878	Submitted genomic		NC_000011.9:g.(?_5 8632160)_(58635965 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	58,632,160	58,635,965
nssv14090931	Submitted genomic		NC_000011.9:g.(?_5 8632160)_(58635965 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	58,632,160	58,635,965
nssv14090967	Submitted genomic		NC_000011.9:g.(?_5 8632160)_(58635965 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	58,632,160	58,635,965
nssv14091020	Submitted genomic		NC_000011.9:g.(?_5 8632160)_(58635965 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	58,632,160	58,635,965
nssv14091035	Submitted genomic		NC_000011.9:g.(?_5 8632160)_(58635965 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	58,632,160	58,635,965
nssv14091054	Submitted genomic		NC_000011.9:g.(?_5 8632160)_(58635965 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	58,632,160	58,635,965
nssv14091085	Submitted genomic		NC_000011.9:g.(?_5 8632160)_(58635965 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	58,632,160	58,635,965
nssv14091710	Submitted genomic		NC_000011.9:g.(?_5 8632160)_(58635965 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	58,632,160	58,635,965
nssv14091728	Submitted genomic		NC_000011.9:g.(?_5 8632160)_(58635965 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	58,632,160	58,635,965
nssv14091733	Submitted genomic		NC_000011.9:g.(?_5 8632160)_(58635965 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	58,632,160	58,635,965
nssv14091869	Submitted genomic		NC_000011.9:g.(?_5 8632160)_(58635965 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	58,632,160	58,635,965
nssv14091872	Submitted genomic		NC_000011.9:g.(?_5 8632160)_(58635965 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	58,632,160	58,635,965
nssv14092012	Submitted genomic		NC_000011.9:g.(?_5 8632160)_(58635965 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	58,632,160	58,635,965
nssv14093070	Submitted genomic		NC_000011.9:g.(?_5 8632160)_(58635965 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	58,632,160	58,635,965
nssv14093138	Submitted genomic		NC_000011.9:g.(?_5 8632160)_(58635965 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	58,632,160	58,635,965
nssv14093191	Submitted genomic		NC_000011.9:g.(?_5 8632160)_(58635965 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	58,632,160	58,635,965
nssv14093218	Submitted genomic		NC_000011.9:g.(?_5 8632160)_(58635965 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	58,632,160	58,635,965

dbVar

Database of genomic structural variation

nsv3116345

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant