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dbVar

Database of genomic structural variation

nsv3116586

Organism: Homo sapiens

Study:nstd145 (Lu et al. 2017)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:8
Validation:Not tested
Clinical Assertions: No
Region Size:22,756

Publication(s):Lu et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 922 SVs from 83 studies. See in: genome view

Remapped(Score: Perfect):10,209,794-10,232,549

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3116586	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	10,209,794	10,232,549
nsv3116586	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000004.11	Chr4	10,211,418	10,234,173

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14092122	deletion	sample216	Oligo aCGH	Probe signal intensity	96
nssv14093462	deletion	sample294	Oligo aCGH	Probe signal intensity	47
nssv14093517	deletion	sample304	Oligo aCGH	Probe signal intensity	87
nssv14093662	deletion	sample334	Oligo aCGH	Probe signal intensity	36
nssv14094752	deletion	sample367	Oligo aCGH	Probe signal intensity	31
nssv14107177	deletion	sample14	Oligo aCGH	Probe signal intensity	61
nssv14107390	deletion	sample50	Oligo aCGH	Probe signal intensity	68
nssv14107430	duplication	sample57	Oligo aCGH	Probe signal intensity	34

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14092122	Remapped	Perfect	NC_000004.12:g.(?_ 10209794)_(1023254 9_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	10,209,794	10,232,549
nssv14093462	Remapped	Perfect	NC_000004.12:g.(?_ 10209794)_(1023254 9_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	10,209,794	10,232,549
nssv14093517	Remapped	Perfect	NC_000004.12:g.(?_ 10209794)_(1023254 9_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	10,209,794	10,232,549
nssv14093662	Remapped	Perfect	NC_000004.12:g.(?_ 10209794)_(1023254 9_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	10,209,794	10,232,549
nssv14094752	Remapped	Perfect	NC_000004.12:g.(?_ 10209794)_(1023254 9_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	10,209,794	10,232,549
nssv14107177	Remapped	Perfect	NC_000004.12:g.(?_ 10209794)_(1023254 9_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	10,209,794	10,232,549
nssv14107390	Remapped	Perfect	NC_000004.12:g.(?_ 10209794)_(1023254 9_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	10,209,794	10,232,549
nssv14107430	Remapped	Perfect	NC_000004.12:g.(?_ 10209794)_(1023254 9_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	10,209,794	10,232,549
nssv14092122	Submitted genomic		NC_000004.11:g.(?_ 10211418)_(1023417 3_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	10,211,418	10,234,173
nssv14093462	Submitted genomic		NC_000004.11:g.(?_ 10211418)_(1023417 3_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	10,211,418	10,234,173
nssv14093517	Submitted genomic		NC_000004.11:g.(?_ 10211418)_(1023417 3_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	10,211,418	10,234,173
nssv14093662	Submitted genomic		NC_000004.11:g.(?_ 10211418)_(1023417 3_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	10,211,418	10,234,173
nssv14094752	Submitted genomic		NC_000004.11:g.(?_ 10211418)_(1023417 3_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	10,211,418	10,234,173
nssv14107177	Submitted genomic		NC_000004.11:g.(?_ 10211418)_(1023417 3_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	10,211,418	10,234,173
nssv14107390	Submitted genomic		NC_000004.11:g.(?_ 10211418)_(1023417 3_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	10,211,418	10,234,173
nssv14107430	Submitted genomic		NC_000004.11:g.(?_ 10211418)_(1023417 3_?)dup	GRCh37 (hg19)		NC_000004.11	Chr4	10,211,418	10,234,173

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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