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dbVar

Database of genomic structural variation

nsv3116905

Organism: Homo sapiens

Study:nstd145 (Lu et al. 2017)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:4,066

Publication(s):Lu et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 164 SVs from 32 studies. See in: genome view

Remapped(Score: Perfect):35,824,488-35,828,553

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3116905	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000013.11	Chr13	35,824,488	35,828,553
nsv3116905	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000013.10	Chr13	36,398,625	36,402,690

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14094617	deletion	sample156	Oligo aCGH	Probe signal intensity	83
nssv14095662	deletion	sample180	Oligo aCGH	Probe signal intensity	57
nssv14095718	deletion	sample206	Oligo aCGH	Probe signal intensity	96
nssv14095876	deletion	sample303	Oligo aCGH	Probe signal intensity	81

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14094617	Remapped	Perfect	NC_000013.11:g.(?_ 35824488)_(3582855 3_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	35,824,488	35,828,553
nssv14095662	Remapped	Perfect	NC_000013.11:g.(?_ 35824488)_(3582855 3_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	35,824,488	35,828,553
nssv14095718	Remapped	Perfect	NC_000013.11:g.(?_ 35824488)_(3582855 3_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	35,824,488	35,828,553
nssv14095876	Remapped	Perfect	NC_000013.11:g.(?_ 35824488)_(3582855 3_?)del	GRCh38.p12	First Pass	NC_000013.11	Chr13	35,824,488	35,828,553
nssv14094617	Submitted genomic		NC_000013.10:g.(?_ 36398625)_(3640269 0_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	36,398,625	36,402,690
nssv14095662	Submitted genomic		NC_000013.10:g.(?_ 36398625)_(3640269 0_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	36,398,625	36,402,690
nssv14095718	Submitted genomic		NC_000013.10:g.(?_ 36398625)_(3640269 0_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	36,398,625	36,402,690
nssv14095876	Submitted genomic		NC_000013.10:g.(?_ 36398625)_(3640269 0_?)del	GRCh37 (hg19)		NC_000013.10	Chr13	36,398,625	36,402,690

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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