nsv3116994

Organism: Homo sapiens

Study:nstd145 (Lu et al. 2017)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:25
Validation:Not tested
Clinical Assertions: No
Region Size:22,252

Publication(s):Lu et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 708 SVs from 72 studies. See in: genome view

Remapped(Score: Perfect):55,765,141-55,787,392

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3116994	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	55,765,141	55,787,392
nsv3116994	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000016.9	Chr16	55,799,053	55,821,304

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14096342	deletion	sample233	Oligo aCGH	Probe signal intensity	77
nssv14096350	deletion	sample236	Oligo aCGH	Probe signal intensity	62
nssv14096355	deletion	sample239	Oligo aCGH	Probe signal intensity	46
nssv14096488	deletion	sample310	Oligo aCGH	Probe signal intensity	83
nssv14096516	deletion	sample325	Oligo aCGH	Probe signal intensity	58
nssv14096534	deletion	sample346	Oligo aCGH	Probe signal intensity	74
nssv14097823	deletion	sample368	Oligo aCGH	Probe signal intensity	80
nssv14097827	deletion	sample369	Oligo aCGH	Probe signal intensity	84
nssv14097834	deletion	sample372	Oligo aCGH	Probe signal intensity	71
nssv14097857	deletion	sample382	Oligo aCGH	Probe signal intensity	83
nssv14097870	deletion	sample387	Oligo aCGH	Probe signal intensity	78
nssv14097909	deletion	sample404	Oligo aCGH	Probe signal intensity	74
nssv14098235	deletion	sample18	Oligo aCGH	Probe signal intensity	81
nssv14098254	deletion	sample30	Oligo aCGH	Probe signal intensity	21
nssv14098364	deletion	sample83	Oligo aCGH	Probe signal intensity	88
nssv14098399	deletion	sample98	Oligo aCGH	Probe signal intensity	89
nssv14099093	deletion	sample128	Oligo aCGH	Probe signal intensity	79
nssv14099113	deletion	sample141	Oligo aCGH	Probe signal intensity	79
nssv14099147	deletion	sample154	Oligo aCGH	Probe signal intensity	79
nssv14099168	deletion	sample162	Oligo aCGH	Probe signal intensity	86
nssv14099172	deletion	sample164	Oligo aCGH	Probe signal intensity	57
nssv14099179	deletion	sample169	Oligo aCGH	Probe signal intensity	90
nssv14099210	deletion	sample186	Oligo aCGH	Probe signal intensity	82
nssv14099227	deletion	sample197	Oligo aCGH	Probe signal intensity	86
nssv14099261	deletion	sample217	Oligo aCGH	Probe signal intensity	80

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14096342	Remapped	Perfect	NC_000016.10:g.(?_ 55765141)_(5578739 2_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,765,141	55,787,392
nssv14096350	Remapped	Perfect	NC_000016.10:g.(?_ 55765141)_(5578739 2_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,765,141	55,787,392
nssv14096355	Remapped	Perfect	NC_000016.10:g.(?_ 55765141)_(5578739 2_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,765,141	55,787,392
nssv14096488	Remapped	Perfect	NC_000016.10:g.(?_ 55765141)_(5578739 2_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,765,141	55,787,392
nssv14096516	Remapped	Perfect	NC_000016.10:g.(?_ 55765141)_(5578739 2_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,765,141	55,787,392
nssv14096534	Remapped	Perfect	NC_000016.10:g.(?_ 55765141)_(5578739 2_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,765,141	55,787,392
nssv14097823	Remapped	Perfect	NC_000016.10:g.(?_ 55765141)_(5578739 2_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,765,141	55,787,392
nssv14097827	Remapped	Perfect	NC_000016.10:g.(?_ 55765141)_(5578739 2_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,765,141	55,787,392
nssv14097834	Remapped	Perfect	NC_000016.10:g.(?_ 55765141)_(5578739 2_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,765,141	55,787,392
nssv14097857	Remapped	Perfect	NC_000016.10:g.(?_ 55765141)_(5578739 2_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,765,141	55,787,392
nssv14097870	Remapped	Perfect	NC_000016.10:g.(?_ 55765141)_(5578739 2_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,765,141	55,787,392
nssv14097909	Remapped	Perfect	NC_000016.10:g.(?_ 55765141)_(5578739 2_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,765,141	55,787,392
nssv14098235	Remapped	Perfect	NC_000016.10:g.(?_ 55765141)_(5578739 2_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,765,141	55,787,392
nssv14098254	Remapped	Perfect	NC_000016.10:g.(?_ 55765141)_(5578739 2_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,765,141	55,787,392
nssv14098364	Remapped	Perfect	NC_000016.10:g.(?_ 55765141)_(5578739 2_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,765,141	55,787,392
nssv14098399	Remapped	Perfect	NC_000016.10:g.(?_ 55765141)_(5578739 2_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,765,141	55,787,392
nssv14099093	Remapped	Perfect	NC_000016.10:g.(?_ 55765141)_(5578739 2_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,765,141	55,787,392
nssv14099113	Remapped	Perfect	NC_000016.10:g.(?_ 55765141)_(5578739 2_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,765,141	55,787,392
nssv14099147	Remapped	Perfect	NC_000016.10:g.(?_ 55765141)_(5578739 2_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,765,141	55,787,392
nssv14099168	Remapped	Perfect	NC_000016.10:g.(?_ 55765141)_(5578739 2_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,765,141	55,787,392
nssv14099172	Remapped	Perfect	NC_000016.10:g.(?_ 55765141)_(5578739 2_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,765,141	55,787,392
nssv14099179	Remapped	Perfect	NC_000016.10:g.(?_ 55765141)_(5578739 2_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,765,141	55,787,392
nssv14099210	Remapped	Perfect	NC_000016.10:g.(?_ 55765141)_(5578739 2_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,765,141	55,787,392
nssv14099227	Remapped	Perfect	NC_000016.10:g.(?_ 55765141)_(5578739 2_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,765,141	55,787,392
nssv14099261	Remapped	Perfect	NC_000016.10:g.(?_ 55765141)_(5578739 2_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	55,765,141	55,787,392
nssv14096342	Submitted genomic		NC_000016.9:g.(?_5 5799053)_(55821304 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,799,053	55,821,304
nssv14096350	Submitted genomic		NC_000016.9:g.(?_5 5799053)_(55821304 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,799,053	55,821,304
nssv14096355	Submitted genomic		NC_000016.9:g.(?_5 5799053)_(55821304 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,799,053	55,821,304
nssv14096488	Submitted genomic		NC_000016.9:g.(?_5 5799053)_(55821304 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,799,053	55,821,304
nssv14096516	Submitted genomic		NC_000016.9:g.(?_5 5799053)_(55821304 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,799,053	55,821,304
nssv14096534	Submitted genomic		NC_000016.9:g.(?_5 5799053)_(55821304 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,799,053	55,821,304
nssv14097823	Submitted genomic		NC_000016.9:g.(?_5 5799053)_(55821304 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,799,053	55,821,304
nssv14097827	Submitted genomic		NC_000016.9:g.(?_5 5799053)_(55821304 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,799,053	55,821,304
nssv14097834	Submitted genomic		NC_000016.9:g.(?_5 5799053)_(55821304 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,799,053	55,821,304
nssv14097857	Submitted genomic		NC_000016.9:g.(?_5 5799053)_(55821304 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,799,053	55,821,304
nssv14097870	Submitted genomic		NC_000016.9:g.(?_5 5799053)_(55821304 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,799,053	55,821,304
nssv14097909	Submitted genomic		NC_000016.9:g.(?_5 5799053)_(55821304 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,799,053	55,821,304
nssv14098235	Submitted genomic		NC_000016.9:g.(?_5 5799053)_(55821304 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,799,053	55,821,304
nssv14098254	Submitted genomic		NC_000016.9:g.(?_5 5799053)_(55821304 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,799,053	55,821,304
nssv14098364	Submitted genomic		NC_000016.9:g.(?_5 5799053)_(55821304 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,799,053	55,821,304
nssv14098399	Submitted genomic		NC_000016.9:g.(?_5 5799053)_(55821304 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,799,053	55,821,304
nssv14099093	Submitted genomic		NC_000016.9:g.(?_5 5799053)_(55821304 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,799,053	55,821,304
nssv14099113	Submitted genomic		NC_000016.9:g.(?_5 5799053)_(55821304 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,799,053	55,821,304
nssv14099147	Submitted genomic		NC_000016.9:g.(?_5 5799053)_(55821304 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,799,053	55,821,304
nssv14099168	Submitted genomic		NC_000016.9:g.(?_5 5799053)_(55821304 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,799,053	55,821,304
nssv14099172	Submitted genomic		NC_000016.9:g.(?_5 5799053)_(55821304 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,799,053	55,821,304
nssv14099179	Submitted genomic		NC_000016.9:g.(?_5 5799053)_(55821304 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,799,053	55,821,304
nssv14099210	Submitted genomic		NC_000016.9:g.(?_5 5799053)_(55821304 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,799,053	55,821,304
nssv14099227	Submitted genomic		NC_000016.9:g.(?_5 5799053)_(55821304 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,799,053	55,821,304
nssv14099261	Submitted genomic		NC_000016.9:g.(?_5 5799053)_(55821304 _?)del	GRCh37 (hg19)		NC_000016.9	Chr16	55,799,053	55,821,304

dbVar

Database of genomic structural variation

nsv3116994

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant