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dbVar

Database of genomic structural variation

nsv3117460

Organism: Homo sapiens

Study:nstd145 (Lu et al. 2017)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:19,626

Publication(s):Lu et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 235 SVs from 47 studies. See in: genome view

Remapped(Score: Perfect):41,573,719-41,593,344

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3117460	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	41,573,719	41,593,344
nsv3117460	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000003.11	Chr3	41,615,210	41,634,835

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14104424	deletion	sample69	Oligo aCGH	Probe signal intensity	90
nssv14104518	deletion	sample86	Oligo aCGH	Probe signal intensity	33
nssv14106480	deletion	sample154	Oligo aCGH	Probe signal intensity	79

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14104424	Remapped	Perfect	NC_000003.12:g.(?_ 41573719)_(4159334 4_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	41,573,719	41,593,344
nssv14104518	Remapped	Perfect	NC_000003.12:g.(?_ 41573719)_(4159334 4_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	41,573,719	41,593,344
nssv14106480	Remapped	Perfect	NC_000003.12:g.(?_ 41573719)_(4159334 4_?)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	41,573,719	41,593,344
nssv14104424	Submitted genomic		NC_000003.11:g.(?_ 41615210)_(4163483 5_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	41,615,210	41,634,835
nssv14104518	Submitted genomic		NC_000003.11:g.(?_ 41615210)_(4163483 5_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	41,615,210	41,634,835
nssv14106480	Submitted genomic		NC_000003.11:g.(?_ 41615210)_(4163483 5_?)del	GRCh37 (hg19)		NC_000003.11	Chr3	41,615,210	41,634,835

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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