nsv3117623

Organism: Homo sapiens

Study:nstd145 (Lu et al. 2017)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:16
Validation:Not tested
Clinical Assertions: No
Region Size:7,762

Publication(s):Lu et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 304 SVs from 68 studies. See in: genome view

Remapped(Score: Perfect):34,638,639-34,646,400

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3117623	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	34,638,639	34,646,400
nsv3117623	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000001.10	Chr1	35,104,240	35,112,001

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14083755	deletion	sample159	Oligo aCGH	Probe signal intensity	62
nssv14084210	deletion	sample191	Oligo aCGH	Probe signal intensity	68
nssv14085559	deletion	sample203	Oligo aCGH	Probe signal intensity	88
nssv14087229	deletion	sample234	Oligo aCGH	Probe signal intensity	93
nssv14088336	deletion	sample236	Oligo aCGH	Probe signal intensity	62
nssv14090844	deletion	sample244	Oligo aCGH	Probe signal intensity	74
nssv14093217	deletion	sample283	Oligo aCGH	Probe signal intensity	54
nssv14094432	deletion	sample310	Oligo aCGH	Probe signal intensity	83
nssv14096284	deletion	sample331	Oligo aCGH	Probe signal intensity	100
nssv14096741	deletion	sample137	Oligo aCGH	Probe signal intensity	82
nssv14099360	deletion	sample381	Oligo aCGH	Probe signal intensity	56
nssv14099671	deletion	sample392	Oligo aCGH	Probe signal intensity	75
nssv14102595	deletion	sample418	Oligo aCGH	Probe signal intensity	83
nssv14107539	deletion	sample107	Oligo aCGH	Probe signal intensity	63
nssv14107783	deletion	sample91	Oligo aCGH	Probe signal intensity	90
nssv14108937	deletion	sample13	Oligo aCGH	Probe signal intensity	61

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14083755	Remapped	Perfect	NC_000001.11:g.(?_ 34638639)_(3464640 0_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	34,638,639	34,646,400
nssv14084210	Remapped	Perfect	NC_000001.11:g.(?_ 34638639)_(3464640 0_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	34,638,639	34,646,400
nssv14085559	Remapped	Perfect	NC_000001.11:g.(?_ 34638639)_(3464640 0_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	34,638,639	34,646,400
nssv14087229	Remapped	Perfect	NC_000001.11:g.(?_ 34638639)_(3464640 0_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	34,638,639	34,646,400
nssv14088336	Remapped	Perfect	NC_000001.11:g.(?_ 34638639)_(3464640 0_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	34,638,639	34,646,400
nssv14090844	Remapped	Perfect	NC_000001.11:g.(?_ 34638639)_(3464640 0_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	34,638,639	34,646,400
nssv14093217	Remapped	Perfect	NC_000001.11:g.(?_ 34638639)_(3464640 0_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	34,638,639	34,646,400
nssv14094432	Remapped	Perfect	NC_000001.11:g.(?_ 34638639)_(3464640 0_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	34,638,639	34,646,400
nssv14096284	Remapped	Perfect	NC_000001.11:g.(?_ 34638639)_(3464640 0_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	34,638,639	34,646,400
nssv14096741	Remapped	Perfect	NC_000001.11:g.(?_ 34638639)_(3464640 0_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	34,638,639	34,646,400
nssv14099360	Remapped	Perfect	NC_000001.11:g.(?_ 34638639)_(3464640 0_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	34,638,639	34,646,400
nssv14099671	Remapped	Perfect	NC_000001.11:g.(?_ 34638639)_(3464640 0_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	34,638,639	34,646,400
nssv14102595	Remapped	Perfect	NC_000001.11:g.(?_ 34638639)_(3464640 0_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	34,638,639	34,646,400
nssv14107539	Remapped	Perfect	NC_000001.11:g.(?_ 34638639)_(3464640 0_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	34,638,639	34,646,400
nssv14107783	Remapped	Perfect	NC_000001.11:g.(?_ 34638639)_(3464640 0_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	34,638,639	34,646,400
nssv14108937	Remapped	Perfect	NC_000001.11:g.(?_ 34638639)_(3464640 0_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	34,638,639	34,646,400
nssv14083755	Submitted genomic		NC_000001.10:g.(?_ 35104240)_(3511200 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	35,104,240	35,112,001
nssv14084210	Submitted genomic		NC_000001.10:g.(?_ 35104240)_(3511200 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	35,104,240	35,112,001
nssv14085559	Submitted genomic		NC_000001.10:g.(?_ 35104240)_(3511200 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	35,104,240	35,112,001
nssv14087229	Submitted genomic		NC_000001.10:g.(?_ 35104240)_(3511200 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	35,104,240	35,112,001
nssv14088336	Submitted genomic		NC_000001.10:g.(?_ 35104240)_(3511200 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	35,104,240	35,112,001
nssv14090844	Submitted genomic		NC_000001.10:g.(?_ 35104240)_(3511200 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	35,104,240	35,112,001
nssv14093217	Submitted genomic		NC_000001.10:g.(?_ 35104240)_(3511200 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	35,104,240	35,112,001
nssv14094432	Submitted genomic		NC_000001.10:g.(?_ 35104240)_(3511200 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	35,104,240	35,112,001
nssv14096284	Submitted genomic		NC_000001.10:g.(?_ 35104240)_(3511200 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	35,104,240	35,112,001
nssv14096741	Submitted genomic		NC_000001.10:g.(?_ 35104240)_(3511200 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	35,104,240	35,112,001
nssv14099360	Submitted genomic		NC_000001.10:g.(?_ 35104240)_(3511200 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	35,104,240	35,112,001
nssv14099671	Submitted genomic		NC_000001.10:g.(?_ 35104240)_(3511200 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	35,104,240	35,112,001
nssv14102595	Submitted genomic		NC_000001.10:g.(?_ 35104240)_(3511200 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	35,104,240	35,112,001
nssv14107539	Submitted genomic		NC_000001.10:g.(?_ 35104240)_(3511200 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	35,104,240	35,112,001
nssv14107783	Submitted genomic		NC_000001.10:g.(?_ 35104240)_(3511200 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	35,104,240	35,112,001
nssv14108937	Submitted genomic		NC_000001.10:g.(?_ 35104240)_(3511200 1_?)del	GRCh37 (hg19)		NC_000001.10	Chr1	35,104,240	35,112,001

dbVar

Database of genomic structural variation

nsv3117623

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant