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dbVar

Database of genomic structural variation

nsv3117652

Organism: Homo sapiens

Study:nstd145 (Lu et al. 2017)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:1,971

Publication(s):Lu et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 340 SVs from 29 studies. See in: genome view

Remapped(Score: Perfect):19,866,986-19,868,956

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3117652	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000017.11	Chr17	19,866,986	19,868,956
nsv3117652	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000017.10	Chr17	19,770,299	19,772,269

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14097673	deletion	sample224	Oligo aCGH	Probe signal intensity	68
nssv14098125	deletion	sample86	Oligo aCGH	Probe signal intensity	33

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14097673	Remapped	Perfect	NC_000017.11:g.(?_ 19866986)_(1986895 6_?)del	GRCh38.p12	First Pass	NC_000017.11	Chr17	19,866,986	19,868,956
nssv14098125	Remapped	Perfect	NC_000017.11:g.(?_ 19866986)_(1986895 6_?)del	GRCh38.p12	First Pass	NC_000017.11	Chr17	19,866,986	19,868,956
nssv14097673	Submitted genomic		NC_000017.10:g.(?_ 19770299)_(1977226 9_?)del	GRCh37 (hg19)		NC_000017.10	Chr17	19,770,299	19,772,269
nssv14098125	Submitted genomic		NC_000017.10:g.(?_ 19770299)_(1977226 9_?)del	GRCh37 (hg19)		NC_000017.10	Chr17	19,770,299	19,772,269

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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