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dbVar

Database of genomic structural variation

nsv3117828

Organism: Homo sapiens

Study:nstd145 (Lu et al. 2017)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:5,436

Publication(s):Lu et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 486 SVs from 86 studies. See in: genome view

Remapped(Score: Perfect):172,067,518-172,072,953

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3117828	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	172,067,518	172,072,953
nsv3117828	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000004.11	Chr4	172,988,669	172,994,104

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14092053	deletion	sample202	Oligo aCGH	Probe signal intensity	86
nssv14092274	deletion	sample243	Oligo aCGH	Probe signal intensity	92

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14092053	Remapped	Perfect	NC_000004.12:g.(?_ 172067518)_(172072 953_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	172,067,518	172,072,953
nssv14092274	Remapped	Perfect	NC_000004.12:g.(?_ 172067518)_(172072 953_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	172,067,518	172,072,953
nssv14092053	Submitted genomic		NC_000004.11:g.(?_ 172988669)_(172994 104_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	172,988,669	172,994,104
nssv14092274	Submitted genomic		NC_000004.11:g.(?_ 172988669)_(172994 104_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	172,988,669	172,994,104

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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