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dbVar

Database of genomic structural variation

nsv3117927

Organism: Homo sapiens

Study:nstd145 (Lu et al. 2017)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:4,015

Publication(s):Lu et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 180 SVs from 34 studies. See in: genome view

Remapped(Score: Perfect):16,108,901-16,112,915

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3117927	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	16,108,901	16,112,915
nsv3117927	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000004.11	Chr4	16,110,524	16,114,538

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14090444	deletion	sample147	Oligo aCGH	Probe signal intensity	78
nssv14092072	deletion	sample206	Oligo aCGH	Probe signal intensity	96

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14090444	Remapped	Perfect	NC_000004.12:g.(?_ 16108901)_(1611291 5_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	16,108,901	16,112,915
nssv14092072	Remapped	Perfect	NC_000004.12:g.(?_ 16108901)_(1611291 5_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	16,108,901	16,112,915
nssv14090444	Submitted genomic		NC_000004.11:g.(?_ 16110524)_(1611453 8_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	16,110,524	16,114,538
nssv14092072	Submitted genomic		NC_000004.11:g.(?_ 16110524)_(1611453 8_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	16,110,524	16,114,538

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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