nsv3117955

Organism: Homo sapiens

Study:nstd145 (Lu et al. 2017)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:13
Validation:Not tested
Clinical Assertions: No
Region Size:27,586

Publication(s):Lu et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1066 SVs from 82 studies. See in: genome view

Remapped(Score: Perfect):40,845,558-40,873,143

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3117955	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000019.10	Chr19	40,845,558	40,873,143
nsv3117955	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000019.9	Chr19	41,351,463	41,379,048

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14099625	deletion	sample118	Oligo aCGH	Probe signal intensity	95
nssv14099681	deletion	sample140	Oligo aCGH	Probe signal intensity	85
nssv14100385	deletion	sample163	Oligo aCGH	Probe signal intensity	93
nssv14100423	deletion	sample176	Oligo aCGH	Probe signal intensity	67
nssv14100456	deletion	sample189	Oligo aCGH	Probe signal intensity	59
nssv14100999	deletion	sample7	Oligo aCGH	Probe signal intensity	91
nssv14101272	deletion	sample274	Oligo aCGH	Probe signal intensity	73
nssv14101305	deletion	sample286	Oligo aCGH	Probe signal intensity	84
nssv14101307	deletion	sample287	Oligo aCGH	Probe signal intensity	79
nssv14101321	deletion	sample293	Oligo aCGH	Probe signal intensity	64
nssv14101570	deletion	sample382	Oligo aCGH	Probe signal intensity	83
nssv14102868	deletion	sample387	Oligo aCGH	Probe signal intensity	78
nssv14102905	deletion	sample402	Oligo aCGH	Probe signal intensity	95

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14099625	Remapped	Perfect	NC_000019.10:g.(?_ 40845558)_(4087314 3_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,845,558	40,873,143
nssv14099681	Remapped	Perfect	NC_000019.10:g.(?_ 40845558)_(4087314 3_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,845,558	40,873,143
nssv14100385	Remapped	Perfect	NC_000019.10:g.(?_ 40845558)_(4087314 3_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,845,558	40,873,143
nssv14100423	Remapped	Perfect	NC_000019.10:g.(?_ 40845558)_(4087314 3_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,845,558	40,873,143
nssv14100456	Remapped	Perfect	NC_000019.10:g.(?_ 40845558)_(4087314 3_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,845,558	40,873,143
nssv14100999	Remapped	Perfect	NC_000019.10:g.(?_ 40845558)_(4087314 3_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,845,558	40,873,143
nssv14101272	Remapped	Perfect	NC_000019.10:g.(?_ 40845558)_(4087314 3_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,845,558	40,873,143
nssv14101305	Remapped	Perfect	NC_000019.10:g.(?_ 40845558)_(4087314 3_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,845,558	40,873,143
nssv14101307	Remapped	Perfect	NC_000019.10:g.(?_ 40845558)_(4087314 3_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,845,558	40,873,143
nssv14101321	Remapped	Perfect	NC_000019.10:g.(?_ 40845558)_(4087314 3_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,845,558	40,873,143
nssv14101570	Remapped	Perfect	NC_000019.10:g.(?_ 40845558)_(4087314 3_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,845,558	40,873,143
nssv14102868	Remapped	Perfect	NC_000019.10:g.(?_ 40845558)_(4087314 3_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,845,558	40,873,143
nssv14102905	Remapped	Perfect	NC_000019.10:g.(?_ 40845558)_(4087314 3_?)del	GRCh38.p12	First Pass	NC_000019.10	Chr19	40,845,558	40,873,143
nssv14099625	Submitted genomic		NC_000019.9:g.(?_4 1351463)_(41379048 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,351,463	41,379,048
nssv14099681	Submitted genomic		NC_000019.9:g.(?_4 1351463)_(41379048 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,351,463	41,379,048
nssv14100385	Submitted genomic		NC_000019.9:g.(?_4 1351463)_(41379048 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,351,463	41,379,048
nssv14100423	Submitted genomic		NC_000019.9:g.(?_4 1351463)_(41379048 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,351,463	41,379,048
nssv14100456	Submitted genomic		NC_000019.9:g.(?_4 1351463)_(41379048 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,351,463	41,379,048
nssv14100999	Submitted genomic		NC_000019.9:g.(?_4 1351463)_(41379048 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,351,463	41,379,048
nssv14101272	Submitted genomic		NC_000019.9:g.(?_4 1351463)_(41379048 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,351,463	41,379,048
nssv14101305	Submitted genomic		NC_000019.9:g.(?_4 1351463)_(41379048 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,351,463	41,379,048
nssv14101307	Submitted genomic		NC_000019.9:g.(?_4 1351463)_(41379048 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,351,463	41,379,048
nssv14101321	Submitted genomic		NC_000019.9:g.(?_4 1351463)_(41379048 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,351,463	41,379,048
nssv14101570	Submitted genomic		NC_000019.9:g.(?_4 1351463)_(41379048 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,351,463	41,379,048
nssv14102868	Submitted genomic		NC_000019.9:g.(?_4 1351463)_(41379048 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,351,463	41,379,048
nssv14102905	Submitted genomic		NC_000019.9:g.(?_4 1351463)_(41379048 _?)del	GRCh37 (hg19)		NC_000019.9	Chr19	41,351,463	41,379,048

dbVar

Database of genomic structural variation

nsv3117955

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant