nsv3118025
- Organism: Homo sapiens
- Study:nstd145 (Lu et al. 2017)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:GRCh37 (hg19)
- Variant Calls:35
- Validation:Not tested
- Clinical Assertions: No
- Region Size:10,195
- Publication(s):Lu et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 509 SVs from 82 studies. See in: genome view
Overlapping variant regions from other studies: 509 SVs from 82 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3118025 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nsv3118025 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14085214 | deletion | sample146 | Oligo aCGH | Probe signal intensity | 105 |
| nssv14085234 | deletion | sample152 | Oligo aCGH | Probe signal intensity | 85 |
| nssv14085239 | deletion | sample153 | Oligo aCGH | Probe signal intensity | 68 |
| nssv14085273 | deletion | sample161 | Oligo aCGH | Probe signal intensity | 56 |
| nssv14085305 | deletion | sample169 | Oligo aCGH | Probe signal intensity | 90 |
| nssv14085349 | deletion | sample182 | Oligo aCGH | Probe signal intensity | 87 |
| nssv14085762 | deletion | sample7 | Oligo aCGH | Probe signal intensity | 91 |
| nssv14085779 | deletion | sample11 | Oligo aCGH | Probe signal intensity | 90 |
| nssv14085837 | deletion | sample32 | Oligo aCGH | Probe signal intensity | 87 |
| nssv14085874 | deletion | sample41 | Oligo aCGH | Probe signal intensity | 68 |
| nssv14085952 | deletion | sample61 | Oligo aCGH | Probe signal intensity | 81 |
| nssv14085965 | deletion | sample65 | Oligo aCGH | Probe signal intensity | 66 |
| nssv14085974 | deletion | sample68 | Oligo aCGH | Probe signal intensity | 72 |
| nssv14085985 | deletion | sample186 | Oligo aCGH | Probe signal intensity | 82 |
| nssv14085990 | deletion | sample189 | Oligo aCGH | Probe signal intensity | 59 |
| nssv14086174 | deletion | sample238 | Oligo aCGH | Probe signal intensity | 68 |
| nssv14086194 | deletion | sample244 | Oligo aCGH | Probe signal intensity | 74 |
| nssv14086276 | deletion | sample272 | Oligo aCGH | Probe signal intensity | 54 |
| nssv14086291 | deletion | sample276 | Oligo aCGH | Probe signal intensity | 85 |
| nssv14086989 | deletion | sample89 | Oligo aCGH | Probe signal intensity | 102 |
| nssv14086993 | deletion | sample90 | Oligo aCGH | Probe signal intensity | 91 |
| nssv14086999 | deletion | sample91 | Oligo aCGH | Probe signal intensity | 90 |
| nssv14087044 | deletion | sample102 | Oligo aCGH | Probe signal intensity | 95 |
| nssv14087070 | deletion | sample110 | Oligo aCGH | Probe signal intensity | 72 |
| nssv14087111 | deletion | sample119 | Oligo aCGH | Probe signal intensity | 87 |
| nssv14087160 | deletion | sample131 | Oligo aCGH | Probe signal intensity | 50 |
| nssv14087167 | deletion | sample133 | Oligo aCGH | Probe signal intensity | 80 |
| nssv14087183 | deletion | sample136 | Oligo aCGH | Probe signal intensity | 77 |
| nssv14087231 | deletion | sample366 | Oligo aCGH | Probe signal intensity | 60 |
| nssv14087267 | deletion | sample286 | Oligo aCGH | Probe signal intensity | 84 |
| nssv14087361 | deletion | sample312 | Oligo aCGH | Probe signal intensity | 89 |
| nssv14087413 | deletion | sample328 | Oligo aCGH | Probe signal intensity | 70 |
| nssv14087493 | deletion | sample349 | Oligo aCGH | Probe signal intensity | 92 |
| nssv14087501 | deletion | sample353 | Oligo aCGH | Probe signal intensity | 46 |
| nssv14088386 | deletion | sample424 | Oligo aCGH | Probe signal intensity | 70 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14085214 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14085234 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14085239 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14085273 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14085305 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14085349 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14085762 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14085779 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14085837 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14085874 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14085952 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14085965 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14085974 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14085985 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14085990 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14086174 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14086194 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14086276 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14086291 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14086989 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14086993 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14086999 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14087044 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14087070 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14087111 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14087160 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14087167 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14087183 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14087231 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14087267 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14087361 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14087413 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14087493 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14087501 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14088386 | Remapped | Perfect | NC_000008.11:g.(?_ 15544762)_(1555495 6_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 15,544,762 | 15,554,956 |
| nssv14085214 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14085234 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14085239 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14085273 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14085305 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14085349 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14085762 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14085779 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14085837 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14085874 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14085952 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14085965 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14085974 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14085985 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14085990 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14086174 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14086194 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14086276 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14086291 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14086989 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14086993 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14086999 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14087044 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14087070 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14087111 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14087160 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14087167 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14087183 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14087231 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14087267 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14087361 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14087413 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14087493 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14087501 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 | ||
| nssv14088386 | Submitted genomic | NC_000008.10:g.(?_ 15402271)_(1541246 5_?)del | GRCh37 (hg19) | NC_000008.10 | Chr8 | 15,402,271 | 15,412,465 |