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dbVar

Database of genomic structural variation

nsv3118052

Organism: Homo sapiens

Study:nstd145 (Lu et al. 2017)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:GRCh37 (hg19)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:5,803

Publication(s):Lu et al. 2017

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 429 SVs from 67 studies. See in: genome view

Remapped(Score: Perfect):154,601,126-154,606,928

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3118052	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000007.14	Chr7	154,601,126	154,606,928
nsv3118052	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000007.13	Chr7	154,392,836	154,398,638

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv14083178	deletion	sample54	Oligo aCGH	Probe signal intensity	86
nssv14085432	deletion	sample255	Oligo aCGH	Probe signal intensity	14
nssv14085562	deletion	sample283	Oligo aCGH	Probe signal intensity	54
nssv14085726	deletion	sample421	Oligo aCGH	Probe signal intensity	52
nssv14086793	deletion	sample353	Oligo aCGH	Probe signal intensity	46

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv14083178	Remapped	Perfect	NC_000007.14:g.(?_ 154601126)_(154606 928_?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	154,601,126	154,606,928
nssv14085432	Remapped	Perfect	NC_000007.14:g.(?_ 154601126)_(154606 928_?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	154,601,126	154,606,928
nssv14085562	Remapped	Perfect	NC_000007.14:g.(?_ 154601126)_(154606 928_?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	154,601,126	154,606,928
nssv14085726	Remapped	Perfect	NC_000007.14:g.(?_ 154601126)_(154606 928_?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	154,601,126	154,606,928
nssv14086793	Remapped	Perfect	NC_000007.14:g.(?_ 154601126)_(154606 928_?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	154,601,126	154,606,928
nssv14083178	Submitted genomic		NC_000007.13:g.(?_ 154392836)_(154398 638_?)del	GRCh37 (hg19)		NC_000007.13	Chr7	154,392,836	154,398,638
nssv14085432	Submitted genomic		NC_000007.13:g.(?_ 154392836)_(154398 638_?)del	GRCh37 (hg19)		NC_000007.13	Chr7	154,392,836	154,398,638
nssv14085562	Submitted genomic		NC_000007.13:g.(?_ 154392836)_(154398 638_?)del	GRCh37 (hg19)		NC_000007.13	Chr7	154,392,836	154,398,638
nssv14085726	Submitted genomic		NC_000007.13:g.(?_ 154392836)_(154398 638_?)del	GRCh37 (hg19)		NC_000007.13	Chr7	154,392,836	154,398,638
nssv14086793	Submitted genomic		NC_000007.13:g.(?_ 154392836)_(154398 638_?)del	GRCh37 (hg19)		NC_000007.13	Chr7	154,392,836	154,398,638

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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