nsv3118358
- Organism: Homo sapiens
- Study:nstd149 (Gambin et al. 2017)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:GRCh37 (hg19)
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:145,537
- Publication(s):Gambin et al. 2017
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 377 SVs from 47 studies. See in: genome view
Overlapping variant regions from other studies: 377 SVs from 47 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3118358 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 49,755,153 | 49,900,689 |
| nsv3118358 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 50,220,825 | 50,366,361 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis |
|---|---|---|---|---|
| nssv14109485 | copy number loss | AGBL4_Pt7 | Oligo aCGH | Curated |
| nssv14109486 | copy number loss | AGBL4_Pt8 | Oligo aCGH | Curated |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv14109485 | Remapped | Perfect | NC_000001.11:g.(?_ 49755153)_(4990068 9_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 49,755,153 | 49,900,689 |
| nssv14109486 | Remapped | Perfect | NC_000001.11:g.(?_ 49755153)_(4990068 9_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 49,755,153 | 49,900,689 |
| nssv14109485 | Submitted genomic | NC_000001.10:g.(?_ 50220825)_(5036636 1_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 50,220,825 | 50,366,361 | ||
| nssv14109486 | Submitted genomic | NC_000001.10:g.(?_ 50220825)_(5036636 1_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 50,220,825 | 50,366,361 |