nsv3169256
- Organism: Homo sapiens
- Study:nstd158 (Cleal et al. 2019)
- Variant Type:translocation
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Cleal et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 161 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 55 SVs from 13 studies. See in: genome view
Overlapping variant regions from other studies: 27 SVs from 12 studies. See in: genome view
Overlapping variant regions from other studies: 155 SVs from 25 studies. See in: genome view
Overlapping variant regions from other studies: 55 SVs from 13 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
|---|---|---|---|---|---|---|---|---|---|---|
| nsv3169256 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000007.14 | Chr7 | 142,109,591 (-612, +612) | 142,109,591 (-612, +612) | - |
| nsv3169256 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 62,202,653 (-612, +612) | 62,202,653 (-612, +612) | - |
| nsv3169256 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NT_187562.1 | Chr7|NT_18 7562.1 | 71,471 (-612, +612) | 71,471 (-612, +612) | - |
| nsv3169256 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000007.13 | Chr7 | 141,809,391 (-612, +612) | 141,809,391 (-612, +612) | - | ||
| nsv3169256 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000011.9 | Chr11 | 61,970,125 (-612, +612) | 61,970,125 (-612, +612) | - |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv14240215 | interchromosomal translocation | DB79 | Sequencing | Paired-end mapping | 61 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
|---|---|---|---|---|---|---|---|---|---|
| nssv14240215 | Remapped | Perfect | GRCh38.p12 | Second Pass | NT_187562.1 | Chr7|NT_18 7562.1 | 71,471 (-612, +612) | 71,471 (-612, +612) | - |
| nssv14240215 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 142,109,591 (-612, +612) | 142,109,591 (-612, +612) | - |
| nssv14240215 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 62,202,653 (-612, +612) | 62,202,653 (-612, +612) | - |
| nssv14240215 | Submitted genomic | GRCh37 (hg19) | NC_000007.13 | Chr7 | 141,809,391 (-612, +612) | 141,809,391 (-612, +612) | - | ||
| nssv14240215 | Submitted genomic | GRCh37 (hg19) | NC_000011.9 | Chr11 | 61,970,125 (-612, +612) | 61,970,125 (-612, +612) | - |