nsv3169359
- Organism: Homo sapiens
- Study:nstd156 (Fu et al. 2018)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:114,928
- Publication(s):Fu et al. 2018
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 407 SVs from 57 studies. See in: genome view
Overlapping variant regions from other studies: 407 SVs from 57 studies. See in: genome view
Overlapping variant regions from other studies: 129 SVs from 21 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nsv3169359 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000014.9 | Chr14 | 27,669,078 | 27,679,132 | 27,776,438 | 27,784,005 |
nsv3169359 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000014.8 | Chr14 | 28,138,284 | 28,148,338 | 28,245,644 | 28,253,211 |
nsv3169359 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000014.7 | Chr14 | 27,208,124 | 27,218,178 | 27,315,484 | 27,323,051 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
---|---|---|---|---|---|---|
nssv14250832 | deletion | NGO_18 | SNP array | SNP genotyping analysis | 1 | 119 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nssv14250832 | Remapped | Perfect | NC_000014.9:g.(276 69078_27679132)_(2 7776438_27784005)d el | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 27,669,078 | 27,679,132 | 27,776,438 | 27,784,005 |
nssv14250832 | Remapped | Perfect | NC_000014.8:g.(281 38284_28148338)_(2 8245644_28253211)d el | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 28,138,284 | 28,148,338 | 28,245,644 | 28,253,211 |
nssv14250832 | Submitted genomic | NC_000014.7:g.(272 08124_27218178)_(2 7315484_27323051)d el | NCBI36 (hg18) | NC_000014.7 | Chr14 | 27,208,124 | 27,218,178 | 27,315,484 | 27,323,051 |