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dbVar

Database of genomic structural variation

nsv3169397

Organism: Homo sapiens

Study:nstd156 (Fu et al. 2018)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:146,602

Publication(s):Fu et al. 2018

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 936 SVs from 79 studies. See in: genome view

Remapped(Score: Perfect):141,765,842-141,912,443

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv3169397	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000008.11	Chr8	141,765,842	141,768,716	141,909,214	141,912,443
nsv3169397	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000008.10	Chr8	142,847,203	142,850,077	142,990,575	142,993,804
nsv3169397	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000008.9	Chr8	142,845,110	142,847,984	142,988,482	142,991,711

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv14244781	deletion	PML_3	SNP array	SNP genotyping analysis	1	132
nssv14250352	deletion	NGO_16	SNP array	SNP genotyping analysis	1	117

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv14244781	Remapped	Perfect	NC_000008.11:g.(14 1765842_141768716) _(141909214_141912 443)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	141,765,842	141,768,716	141,909,214	141,912,443
nssv14250352	Remapped	Perfect	NC_000008.11:g.(14 1844777_141847034) _(141852090_141863 858)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	141,844,777	141,847,034	141,852,090	141,863,858
nssv14244781	Remapped	Perfect	NC_000008.10:g.(14 2847203_142850077) _(142990575_142993 804)del	GRCh37.p13	First Pass	NC_000008.10	Chr8	142,847,203	142,850,077	142,990,575	142,993,804
nssv14250352	Remapped	Perfect	NC_000008.10:g.(14 2926138_142928395) _(142933451_142945 219)del	GRCh37.p13	First Pass	NC_000008.10	Chr8	142,926,138	142,928,395	142,933,451	142,945,219
nssv14244781	Submitted genomic		NC_000008.9:g.(142 845110_142847984)_ (142988482_1429917 11)del	NCBI36 (hg18)		NC_000008.9	Chr8	142,845,110	142,847,984	142,988,482	142,991,711
nssv14250352	Submitted genomic		NC_000008.9:g.(142 924045_142926302)_ (142931358_1429431 26)del	NCBI36 (hg18)		NC_000008.9	Chr8	142,924,045	142,926,302	142,931,358	142,943,126

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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