nsv3169465
- Organism: Homo sapiens
- Study:nstd156 (Fu et al. 2018)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:5
- Validation:Not tested
- Clinical Assertions: No
- Region Size:22,595
- Publication(s):Fu et al. 2018
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 322 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 322 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 139 SVs from 23 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nsv3169465 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 34,626,073 | 34,637,053 | 34,638,890 | 34,648,667 |
nsv3169465 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 35,091,674 | 35,102,654 | 35,104,491 | 35,114,268 |
nsv3169465 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000001.9 | Chr1 | 34,864,261 | 34,875,241 | 34,877,078 | 34,886,855 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
---|---|---|---|---|---|---|
nssv14242233 | deletion | NGO_18 | SNP array | SNP genotyping analysis | 1 | 119 |
nssv14244173 | deletion | NGO_19 | SNP array | SNP genotyping analysis | 1 | 107 |
nssv14245655 | deletion | NGO_49 | SNP array | SNP genotyping analysis | 1 | 122 |
nssv14245909 | duplication | NGO_34 | SNP array | SNP genotyping analysis | 3 | 122 |
nssv14247083 | deletion | NGO_53 | SNP array | SNP genotyping analysis | 1 | 124 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nssv14242233 | Remapped | Perfect | NC_000001.11:g.(34 626073_34637053)_( 34638890_34648667) del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 34,626,073 | 34,637,053 | 34,638,890 | 34,648,667 |
nssv14244173 | Remapped | Perfect | NC_000001.11:g.(34 626073_34637053)_( 34638890_34648667) del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 34,626,073 | 34,637,053 | 34,638,890 | 34,648,667 |
nssv14245655 | Remapped | Perfect | NC_000001.11:g.(34 626073_34637053)_( 34638890_34648667) del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 34,626,073 | 34,637,053 | 34,638,890 | 34,648,667 |
nssv14245909 | Remapped | Perfect | NC_000001.11:g.(34 626073_34637053)_( 34638890_34648667) dup | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 34,626,073 | 34,637,053 | 34,638,890 | 34,648,667 |
nssv14247083 | Remapped | Perfect | NC_000001.11:g.(34 626073_34637053)_( 34638890_34648667) del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 34,626,073 | 34,637,053 | 34,638,890 | 34,648,667 |
nssv14242233 | Remapped | Perfect | NC_000001.10:g.(35 091674_35102654)_( 35104491_35114268) del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 35,091,674 | 35,102,654 | 35,104,491 | 35,114,268 |
nssv14244173 | Remapped | Perfect | NC_000001.10:g.(35 091674_35102654)_( 35104491_35114268) del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 35,091,674 | 35,102,654 | 35,104,491 | 35,114,268 |
nssv14245655 | Remapped | Perfect | NC_000001.10:g.(35 091674_35102654)_( 35104491_35114268) del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 35,091,674 | 35,102,654 | 35,104,491 | 35,114,268 |
nssv14245909 | Remapped | Perfect | NC_000001.10:g.(35 091674_35102654)_( 35104491_35114268) dup | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 35,091,674 | 35,102,654 | 35,104,491 | 35,114,268 |
nssv14247083 | Remapped | Perfect | NC_000001.10:g.(35 091674_35102654)_( 35104491_35114268) del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 35,091,674 | 35,102,654 | 35,104,491 | 35,114,268 |
nssv14242233 | Submitted genomic | NC_000001.9:g.(348 64261_34875241)_(3 4877078_34886855)d el | NCBI36 (hg18) | NC_000001.9 | Chr1 | 34,864,261 | 34,875,241 | 34,877,078 | 34,886,855 | ||
nssv14244173 | Submitted genomic | NC_000001.9:g.(348 64261_34875241)_(3 4877078_34886855)d el | NCBI36 (hg18) | NC_000001.9 | Chr1 | 34,864,261 | 34,875,241 | 34,877,078 | 34,886,855 | ||
nssv14245655 | Submitted genomic | NC_000001.9:g.(348 64261_34875241)_(3 4877078_34886855)d el | NCBI36 (hg18) | NC_000001.9 | Chr1 | 34,864,261 | 34,875,241 | 34,877,078 | 34,886,855 | ||
nssv14245909 | Submitted genomic | NC_000001.9:g.(348 64261_34875241)_(3 4877078_34886855)d up | NCBI36 (hg18) | NC_000001.9 | Chr1 | 34,864,261 | 34,875,241 | 34,877,078 | 34,886,855 | ||
nssv14247083 | Submitted genomic | NC_000001.9:g.(348 64261_34875241)_(3 4877078_34886855)d el | NCBI36 (hg18) | NC_000001.9 | Chr1 | 34,864,261 | 34,875,241 | 34,877,078 | 34,886,855 |