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dbVar

Database of genomic structural variation

nsv3169478

Organism: Homo sapiens

Study:nstd156 (Fu et al. 2018)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:47,748

Publication(s):Fu et al. 2018

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 266 SVs from 40 studies. See in: genome view

Remapped(Score: Perfect):133,519,742-133,567,489

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv3169478	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000007.14	Chr7	133,519,742	133,530,411	133,565,180	133,567,489
nsv3169478	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000007.13	Chr7	133,204,496	133,215,165	133,249,934	133,252,243
nsv3169478	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000007.12	Chr7	132,855,036	132,865,705	132,900,474	132,902,783

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv14247675	deletion	NGO_19	SNP array	SNP genotyping analysis	1	107
nssv14242448	deletion	NGO_16	SNP array	SNP genotyping analysis	1	117

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv14247675	Remapped	Perfect	NC_000007.14:g.(13 3519742_133530411) _(133558062_133560 250)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	133,519,742	133,530,411	133,558,062	133,560,250
nssv14242448	Remapped	Perfect	NC_000007.14:g.(13 3519742_133530411) _(133565180_133567 489)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	133,519,742	133,530,411	133,565,180	133,567,489
nssv14247675	Remapped	Perfect	NC_000007.13:g.(13 3204496_133215165) _(133242816_133245 004)del	GRCh37.p13	First Pass	NC_000007.13	Chr7	133,204,496	133,215,165	133,242,816	133,245,004
nssv14242448	Remapped	Perfect	NC_000007.13:g.(13 3204496_133215165) _(133249934_133252 243)del	GRCh37.p13	First Pass	NC_000007.13	Chr7	133,204,496	133,215,165	133,249,934	133,252,243
nssv14247675	Submitted genomic		NC_000007.12:g.(13 2855036_132865705) _(132893356_132895 544)del	NCBI36 (hg18)		NC_000007.12	Chr7	132,855,036	132,865,705	132,893,356	132,895,544
nssv14242448	Submitted genomic		NC_000007.12:g.(13 2855036_132865705) _(132900474_132902 783)del	NCBI36 (hg18)		NC_000007.12	Chr7	132,855,036	132,865,705	132,900,474	132,902,783

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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