nsv3169611
- Organism: Homo sapiens
- Study:nstd156 (Fu et al. 2018)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:13
- Validation:Not tested
- Clinical Assertions: No
- Region Size:14,355
- Publication(s):Fu et al. 2018
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 723 SVs from 80 studies. See in: genome view
Overlapping variant regions from other studies: 723 SVs from 80 studies. See in: genome view
Overlapping variant regions from other studies: 341 SVs from 27 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv3169611 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000008.11 | Chr8 | 3,919,342 | 3,926,665 | 3,932,584 | 3,933,696 |
| nsv3169611 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000008.10 | Chr8 | 3,776,864 | 3,784,187 | 3,790,106 | 3,791,218 |
| nsv3169611 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000008.9 | Chr8 | 3,764,272 | 3,771,595 | 3,777,514 | 3,778,626 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv14246616 | duplication | NGO_32 | SNP array | SNP genotyping analysis | 4 | 153 |
| nssv14249303 | deletion | MLY_11 | SNP array | SNP genotyping analysis | 1 | 128 |
| nssv14249615 | deletion | NGO_9 | SNP array | SNP genotyping analysis | 1 | 137 |
| nssv14243791 | deletion | NGO_24 | SNP array | SNP genotyping analysis | 0 | 155 |
| nssv14244897 | deletion | NGO_23 | SNP array | SNP genotyping analysis | 0 | 127 |
| nssv14246286 | deletion | SNI_3 | SNP array | SNP genotyping analysis | 0 | 121 |
| nssv14246875 | deletion | SNI_15 | SNP array | SNP genotyping analysis | 0 | 132 |
| nssv14247072 | deletion | SNI_14 | SNP array | SNP genotyping analysis | 0 | 136 |
| nssv14247805 | deletion | NGO_10 | SNP array | SNP genotyping analysis | 0 | 137 |
| nssv14247975 | deletion | NGO_19 | SNP array | SNP genotyping analysis | 0 | 107 |
| nssv14248290 | deletion | NGO_42 | SNP array | SNP genotyping analysis | 0 | 116 |
| nssv14249836 | deletion | NGO_36 | SNP array | SNP genotyping analysis | 0 | 128 |
| nssv14252109 | deletion | SNI_11 | SNP array | SNP genotyping analysis | 0 | 129 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv14246616 | Remapped | Perfect | NC_000008.11:g.(39 19342_3926665)_(39 32584_3933696)dup | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 3,919,342 | 3,926,665 | 3,932,584 | 3,933,696 |
| nssv14249303 | Remapped | Perfect | NC_000008.11:g.(39 19342_3926665)_(39 32584_3933696)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 3,919,342 | 3,926,665 | 3,932,584 | 3,933,696 |
| nssv14249615 | Remapped | Perfect | NC_000008.11:g.(39 19342_3926665)_(39 32584_3933696)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 3,919,342 | 3,926,665 | 3,932,584 | 3,933,696 |
| nssv14243791 | Remapped | Perfect | NC_000008.11:g.(39 26665_3929538)_(39 32584_3933696)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 3,926,665 | 3,929,538 | 3,932,584 | 3,933,696 |
| nssv14244897 | Remapped | Perfect | NC_000008.11:g.(39 26665_3929538)_(39 32584_3933696)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 3,926,665 | 3,929,538 | 3,932,584 | 3,933,696 |
| nssv14246286 | Remapped | Perfect | NC_000008.11:g.(39 26665_3929538)_(39 32584_3933696)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 3,926,665 | 3,929,538 | 3,932,584 | 3,933,696 |
| nssv14246875 | Remapped | Perfect | NC_000008.11:g.(39 26665_3929538)_(39 32584_3933696)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 3,926,665 | 3,929,538 | 3,932,584 | 3,933,696 |
| nssv14247072 | Remapped | Perfect | NC_000008.11:g.(39 26665_3929538)_(39 32584_3933696)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 3,926,665 | 3,929,538 | 3,932,584 | 3,933,696 |
| nssv14247805 | Remapped | Perfect | NC_000008.11:g.(39 26665_3929538)_(39 32584_3933696)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 3,926,665 | 3,929,538 | 3,932,584 | 3,933,696 |
| nssv14247975 | Remapped | Perfect | NC_000008.11:g.(39 26665_3929538)_(39 32584_3933696)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 3,926,665 | 3,929,538 | 3,932,584 | 3,933,696 |
| nssv14248290 | Remapped | Perfect | NC_000008.11:g.(39 26665_3929538)_(39 32584_3933696)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 3,926,665 | 3,929,538 | 3,932,584 | 3,933,696 |
| nssv14249836 | Remapped | Perfect | NC_000008.11:g.(39 26665_3929538)_(39 32584_3933696)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 3,926,665 | 3,929,538 | 3,932,584 | 3,933,696 |
| nssv14252109 | Remapped | Perfect | NC_000008.11:g.(39 26665_3929538)_(39 32584_3933696)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 3,926,665 | 3,929,538 | 3,932,584 | 3,933,696 |
| nssv14246616 | Remapped | Perfect | NC_000008.10:g.(37 76864_3784187)_(37 90106_3791218)dup | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 3,776,864 | 3,784,187 | 3,790,106 | 3,791,218 |
| nssv14249303 | Remapped | Perfect | NC_000008.10:g.(37 76864_3784187)_(37 90106_3791218)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 3,776,864 | 3,784,187 | 3,790,106 | 3,791,218 |
| nssv14249615 | Remapped | Perfect | NC_000008.10:g.(37 76864_3784187)_(37 90106_3791218)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 3,776,864 | 3,784,187 | 3,790,106 | 3,791,218 |
| nssv14243791 | Remapped | Perfect | NC_000008.10:g.(37 84187_3787060)_(37 90106_3791218)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 3,784,187 | 3,787,060 | 3,790,106 | 3,791,218 |
| nssv14244897 | Remapped | Perfect | NC_000008.10:g.(37 84187_3787060)_(37 90106_3791218)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 3,784,187 | 3,787,060 | 3,790,106 | 3,791,218 |
| nssv14246286 | Remapped | Perfect | NC_000008.10:g.(37 84187_3787060)_(37 90106_3791218)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 3,784,187 | 3,787,060 | 3,790,106 | 3,791,218 |
| nssv14246875 | Remapped | Perfect | NC_000008.10:g.(37 84187_3787060)_(37 90106_3791218)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 3,784,187 | 3,787,060 | 3,790,106 | 3,791,218 |
| nssv14247072 | Remapped | Perfect | NC_000008.10:g.(37 84187_3787060)_(37 90106_3791218)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 3,784,187 | 3,787,060 | 3,790,106 | 3,791,218 |
| nssv14247805 | Remapped | Perfect | NC_000008.10:g.(37 84187_3787060)_(37 90106_3791218)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 3,784,187 | 3,787,060 | 3,790,106 | 3,791,218 |
| nssv14247975 | Remapped | Perfect | NC_000008.10:g.(37 84187_3787060)_(37 90106_3791218)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 3,784,187 | 3,787,060 | 3,790,106 | 3,791,218 |
| nssv14248290 | Remapped | Perfect | NC_000008.10:g.(37 84187_3787060)_(37 90106_3791218)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 3,784,187 | 3,787,060 | 3,790,106 | 3,791,218 |
| nssv14249836 | Remapped | Perfect | NC_000008.10:g.(37 84187_3787060)_(37 90106_3791218)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 3,784,187 | 3,787,060 | 3,790,106 | 3,791,218 |
| nssv14252109 | Remapped | Perfect | NC_000008.10:g.(37 84187_3787060)_(37 90106_3791218)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 3,784,187 | 3,787,060 | 3,790,106 | 3,791,218 |
| nssv14246616 | Submitted genomic | NC_000008.9:g.(376 4272_3771595)_(377 7514_3778626)dup | NCBI36 (hg18) | NC_000008.9 | Chr8 | 3,764,272 | 3,771,595 | 3,777,514 | 3,778,626 | ||
| nssv14249303 | Submitted genomic | NC_000008.9:g.(376 4272_3771595)_(377 7514_3778626)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 3,764,272 | 3,771,595 | 3,777,514 | 3,778,626 | ||
| nssv14249615 | Submitted genomic | NC_000008.9:g.(376 4272_3771595)_(377 7514_3778626)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 3,764,272 | 3,771,595 | 3,777,514 | 3,778,626 | ||
| nssv14243791 | Submitted genomic | NC_000008.9:g.(377 1595_3774468)_(377 7514_3778626)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 3,771,595 | 3,774,468 | 3,777,514 | 3,778,626 | ||
| nssv14244897 | Submitted genomic | NC_000008.9:g.(377 1595_3774468)_(377 7514_3778626)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 3,771,595 | 3,774,468 | 3,777,514 | 3,778,626 | ||
| nssv14246286 | Submitted genomic | NC_000008.9:g.(377 1595_3774468)_(377 7514_3778626)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 3,771,595 | 3,774,468 | 3,777,514 | 3,778,626 | ||
| nssv14246875 | Submitted genomic | NC_000008.9:g.(377 1595_3774468)_(377 7514_3778626)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 3,771,595 | 3,774,468 | 3,777,514 | 3,778,626 | ||
| nssv14247072 | Submitted genomic | NC_000008.9:g.(377 1595_3774468)_(377 7514_3778626)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 3,771,595 | 3,774,468 | 3,777,514 | 3,778,626 | ||
| nssv14247805 | Submitted genomic | NC_000008.9:g.(377 1595_3774468)_(377 7514_3778626)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 3,771,595 | 3,774,468 | 3,777,514 | 3,778,626 | ||
| nssv14247975 | Submitted genomic | NC_000008.9:g.(377 1595_3774468)_(377 7514_3778626)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 3,771,595 | 3,774,468 | 3,777,514 | 3,778,626 | ||
| nssv14248290 | Submitted genomic | NC_000008.9:g.(377 1595_3774468)_(377 7514_3778626)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 3,771,595 | 3,774,468 | 3,777,514 | 3,778,626 | ||
| nssv14249836 | Submitted genomic | NC_000008.9:g.(377 1595_3774468)_(377 7514_3778626)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 3,771,595 | 3,774,468 | 3,777,514 | 3,778,626 | ||
| nssv14252109 | Submitted genomic | NC_000008.9:g.(377 1595_3774468)_(377 7514_3778626)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 3,771,595 | 3,774,468 | 3,777,514 | 3,778,626 |