nsv3169614

Organism: Homo sapiens

Study:nstd156 (Fu et al. 2018)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:24
Validation:Not tested
Clinical Assertions: No
Region Size:82,878

Publication(s):Fu et al. 2018

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 2676 SVs from 100 studies. See in: genome view

Remapped(Score: Perfect):78,253,172-78,336,049

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv3169614	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000006.12	Chr6	78,253,172	78,259,348	78,332,092	78,336,049
nsv3169614	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000006.11	Chr6	78,962,889	78,969,065	79,041,809	79,045,766
nsv3169614	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000006.10	Chr6	79,019,608	79,025,784	79,098,528	79,102,485

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv14240951	deletion	MLY_14	SNP array	SNP genotyping analysis	1	131
nssv14240996	deletion	NGO_19	SNP array	SNP genotyping analysis	1	107
nssv14242089	deletion	NGO_35	SNP array	SNP genotyping analysis	1	111
nssv14242111	deletion	NGO_2	SNP array	SNP genotyping analysis	1	125
nssv14243096	deletion	NGO_18	SNP array	SNP genotyping analysis	1	119
nssv14244952	deletion	NGO_30	SNP array	SNP genotyping analysis	1	117
nssv14245112	deletion	NGO_42	SNP array	SNP genotyping analysis	1	116
nssv14245677	deletion	NGO_6	SNP array	SNP genotyping analysis	1	141
nssv14247260	deletion	NGO_1	SNP array	SNP genotyping analysis	1	139
nssv14247327	deletion	NGO_33	SNP array	SNP genotyping analysis	1	124
nssv14247963	deletion	NGO_3	SNP array	SNP genotyping analysis	0	145
nssv14248177	deletion	NGO_34	SNP array	SNP genotyping analysis	0	122
nssv14248713	deletion	NGO_51	SNP array	SNP genotyping analysis	1	121
nssv14249037	deletion	MLY_4	SNP array	SNP genotyping analysis	1	145
nssv14249488	deletion	SNI_3	SNP array	SNP genotyping analysis	1	121
nssv14249533	deletion	SNI_6	SNP array	SNP genotyping analysis	1	131
nssv14249772	deletion	NGO_31	SNP array	SNP genotyping analysis	0	121
nssv14250237	deletion	NGO_4	SNP array	SNP genotyping analysis	1	126
nssv14250564	deletion	MLY_12	SNP array	SNP genotyping analysis	1	122
nssv14250660	deletion	SNI_2	SNP array	SNP genotyping analysis	1	109
nssv14251214	deletion	NGO_15	SNP array	SNP genotyping analysis	1	124
nssv14251692	deletion	NGO_55	SNP array	SNP genotyping analysis	1	111
nssv14252127	deletion	SNI_11	SNP array	SNP genotyping analysis	1	129
nssv14241114	deletion	NGO_44	SNP array	SNP genotyping analysis	1	101

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv14240951	Remapped	Perfect	NC_000006.12:g.(78 253172_78259348)_( 78325468_78329517) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,253,172	78,259,348	78,325,468	78,329,517
nssv14240996	Remapped	Perfect	NC_000006.12:g.(78 253172_78259348)_( 78325468_78329517) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,253,172	78,259,348	78,325,468	78,329,517
nssv14242089	Remapped	Perfect	NC_000006.12:g.(78 253172_78259348)_( 78325468_78329517) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,253,172	78,259,348	78,325,468	78,329,517
nssv14242111	Remapped	Perfect	NC_000006.12:g.(78 253172_78259348)_( 78325468_78329517) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,253,172	78,259,348	78,325,468	78,329,517
nssv14243096	Remapped	Perfect	NC_000006.12:g.(78 253172_78259348)_( 78325468_78329517) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,253,172	78,259,348	78,325,468	78,329,517
nssv14244952	Remapped	Perfect	NC_000006.12:g.(78 253172_78259348)_( 78325468_78329517) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,253,172	78,259,348	78,325,468	78,329,517
nssv14245112	Remapped	Perfect	NC_000006.12:g.(78 253172_78259348)_( 78325468_78329517) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,253,172	78,259,348	78,325,468	78,329,517
nssv14245677	Remapped	Perfect	NC_000006.12:g.(78 253172_78259348)_( 78325468_78329517) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,253,172	78,259,348	78,325,468	78,329,517
nssv14247260	Remapped	Perfect	NC_000006.12:g.(78 253172_78259348)_( 78325468_78329517) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,253,172	78,259,348	78,325,468	78,329,517
nssv14247327	Remapped	Perfect	NC_000006.12:g.(78 253172_78259348)_( 78325468_78329517) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,253,172	78,259,348	78,325,468	78,329,517
nssv14247963	Remapped	Perfect	NC_000006.12:g.(78 253172_78259348)_( 78325468_78329517) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,253,172	78,259,348	78,325,468	78,329,517
nssv14248177	Remapped	Perfect	NC_000006.12:g.(78 253172_78259348)_( 78325468_78329517) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,253,172	78,259,348	78,325,468	78,329,517
nssv14248713	Remapped	Perfect	NC_000006.12:g.(78 253172_78259348)_( 78325468_78329517) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,253,172	78,259,348	78,325,468	78,329,517
nssv14249037	Remapped	Perfect	NC_000006.12:g.(78 253172_78259348)_( 78325468_78329517) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,253,172	78,259,348	78,325,468	78,329,517
nssv14249488	Remapped	Perfect	NC_000006.12:g.(78 253172_78259348)_( 78325468_78329517) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,253,172	78,259,348	78,325,468	78,329,517
nssv14249533	Remapped	Perfect	NC_000006.12:g.(78 253172_78259348)_( 78325468_78329517) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,253,172	78,259,348	78,325,468	78,329,517
nssv14249772	Remapped	Perfect	NC_000006.12:g.(78 253172_78259348)_( 78325468_78329517) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,253,172	78,259,348	78,325,468	78,329,517
nssv14250237	Remapped	Perfect	NC_000006.12:g.(78 253172_78259348)_( 78325468_78329517) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,253,172	78,259,348	78,325,468	78,329,517
nssv14250564	Remapped	Perfect	NC_000006.12:g.(78 253172_78259348)_( 78325468_78329517) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,253,172	78,259,348	78,325,468	78,329,517
nssv14250660	Remapped	Perfect	NC_000006.12:g.(78 253172_78259348)_( 78325468_78329517) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,253,172	78,259,348	78,325,468	78,329,517
nssv14251214	Remapped	Perfect	NC_000006.12:g.(78 253172_78259348)_( 78325468_78329517) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,253,172	78,259,348	78,325,468	78,329,517
nssv14251692	Remapped	Perfect	NC_000006.12:g.(78 253172_78259348)_( 78325468_78329517) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,253,172	78,259,348	78,325,468	78,329,517
nssv14252127	Remapped	Perfect	NC_000006.12:g.(78 253172_78259348)_( 78325468_78329517) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,253,172	78,259,348	78,325,468	78,329,517
nssv14241114	Remapped	Perfect	NC_000006.12:g.(78 253172_78259348)_( 78332092_78336049) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	78,253,172	78,259,348	78,332,092	78,336,049
nssv14240951	Remapped	Perfect	NC_000006.11:g.(78 962889_78969065)_( 79035185_79039234) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	78,962,889	78,969,065	79,035,185	79,039,234
nssv14240996	Remapped	Perfect	NC_000006.11:g.(78 962889_78969065)_( 79035185_79039234) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	78,962,889	78,969,065	79,035,185	79,039,234
nssv14242089	Remapped	Perfect	NC_000006.11:g.(78 962889_78969065)_( 79035185_79039234) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	78,962,889	78,969,065	79,035,185	79,039,234
nssv14242111	Remapped	Perfect	NC_000006.11:g.(78 962889_78969065)_( 79035185_79039234) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	78,962,889	78,969,065	79,035,185	79,039,234
nssv14243096	Remapped	Perfect	NC_000006.11:g.(78 962889_78969065)_( 79035185_79039234) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	78,962,889	78,969,065	79,035,185	79,039,234
nssv14244952	Remapped	Perfect	NC_000006.11:g.(78 962889_78969065)_( 79035185_79039234) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	78,962,889	78,969,065	79,035,185	79,039,234
nssv14245112	Remapped	Perfect	NC_000006.11:g.(78 962889_78969065)_( 79035185_79039234) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	78,962,889	78,969,065	79,035,185	79,039,234
nssv14245677	Remapped	Perfect	NC_000006.11:g.(78 962889_78969065)_( 79035185_79039234) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	78,962,889	78,969,065	79,035,185	79,039,234
nssv14247260	Remapped	Perfect	NC_000006.11:g.(78 962889_78969065)_( 79035185_79039234) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	78,962,889	78,969,065	79,035,185	79,039,234
nssv14247327	Remapped	Perfect	NC_000006.11:g.(78 962889_78969065)_( 79035185_79039234) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	78,962,889	78,969,065	79,035,185	79,039,234
nssv14247963	Remapped	Perfect	NC_000006.11:g.(78 962889_78969065)_( 79035185_79039234) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	78,962,889	78,969,065	79,035,185	79,039,234
nssv14248177	Remapped	Perfect	NC_000006.11:g.(78 962889_78969065)_( 79035185_79039234) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	78,962,889	78,969,065	79,035,185	79,039,234
nssv14248713	Remapped	Perfect	NC_000006.11:g.(78 962889_78969065)_( 79035185_79039234) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	78,962,889	78,969,065	79,035,185	79,039,234
nssv14249037	Remapped	Perfect	NC_000006.11:g.(78 962889_78969065)_( 79035185_79039234) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	78,962,889	78,969,065	79,035,185	79,039,234
nssv14249488	Remapped	Perfect	NC_000006.11:g.(78 962889_78969065)_( 79035185_79039234) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	78,962,889	78,969,065	79,035,185	79,039,234
nssv14249533	Remapped	Perfect	NC_000006.11:g.(78 962889_78969065)_( 79035185_79039234) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	78,962,889	78,969,065	79,035,185	79,039,234
nssv14249772	Remapped	Perfect	NC_000006.11:g.(78 962889_78969065)_( 79035185_79039234) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	78,962,889	78,969,065	79,035,185	79,039,234
nssv14250237	Remapped	Perfect	NC_000006.11:g.(78 962889_78969065)_( 79035185_79039234) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	78,962,889	78,969,065	79,035,185	79,039,234
nssv14250564	Remapped	Perfect	NC_000006.11:g.(78 962889_78969065)_( 79035185_79039234) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	78,962,889	78,969,065	79,035,185	79,039,234
nssv14250660	Remapped	Perfect	NC_000006.11:g.(78 962889_78969065)_( 79035185_79039234) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	78,962,889	78,969,065	79,035,185	79,039,234
nssv14251214	Remapped	Perfect	NC_000006.11:g.(78 962889_78969065)_( 79035185_79039234) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	78,962,889	78,969,065	79,035,185	79,039,234
nssv14251692	Remapped	Perfect	NC_000006.11:g.(78 962889_78969065)_( 79035185_79039234) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	78,962,889	78,969,065	79,035,185	79,039,234
nssv14252127	Remapped	Perfect	NC_000006.11:g.(78 962889_78969065)_( 79035185_79039234) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	78,962,889	78,969,065	79,035,185	79,039,234
nssv14241114	Remapped	Perfect	NC_000006.11:g.(78 962889_78969065)_( 79041809_79045766) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	78,962,889	78,969,065	79,041,809	79,045,766
nssv14240951	Submitted genomic		NC_000006.10:g.(79 019608_79025784)_( 79091904_79095953) del	NCBI36 (hg18)		NC_000006.10	Chr6	79,019,608	79,025,784	79,091,904	79,095,953
nssv14240996	Submitted genomic		NC_000006.10:g.(79 019608_79025784)_( 79091904_79095953) del	NCBI36 (hg18)		NC_000006.10	Chr6	79,019,608	79,025,784	79,091,904	79,095,953
nssv14242089	Submitted genomic		NC_000006.10:g.(79 019608_79025784)_( 79091904_79095953) del	NCBI36 (hg18)		NC_000006.10	Chr6	79,019,608	79,025,784	79,091,904	79,095,953
nssv14242111	Submitted genomic		NC_000006.10:g.(79 019608_79025784)_( 79091904_79095953) del	NCBI36 (hg18)		NC_000006.10	Chr6	79,019,608	79,025,784	79,091,904	79,095,953
nssv14243096	Submitted genomic		NC_000006.10:g.(79 019608_79025784)_( 79091904_79095953) del	NCBI36 (hg18)		NC_000006.10	Chr6	79,019,608	79,025,784	79,091,904	79,095,953
nssv14244952	Submitted genomic		NC_000006.10:g.(79 019608_79025784)_( 79091904_79095953) del	NCBI36 (hg18)		NC_000006.10	Chr6	79,019,608	79,025,784	79,091,904	79,095,953
nssv14245112	Submitted genomic		NC_000006.10:g.(79 019608_79025784)_( 79091904_79095953) del	NCBI36 (hg18)		NC_000006.10	Chr6	79,019,608	79,025,784	79,091,904	79,095,953
nssv14245677	Submitted genomic		NC_000006.10:g.(79 019608_79025784)_( 79091904_79095953) del	NCBI36 (hg18)		NC_000006.10	Chr6	79,019,608	79,025,784	79,091,904	79,095,953
nssv14247260	Submitted genomic		NC_000006.10:g.(79 019608_79025784)_( 79091904_79095953) del	NCBI36 (hg18)		NC_000006.10	Chr6	79,019,608	79,025,784	79,091,904	79,095,953
nssv14247327	Submitted genomic		NC_000006.10:g.(79 019608_79025784)_( 79091904_79095953) del	NCBI36 (hg18)		NC_000006.10	Chr6	79,019,608	79,025,784	79,091,904	79,095,953
nssv14247963	Submitted genomic		NC_000006.10:g.(79 019608_79025784)_( 79091904_79095953) del	NCBI36 (hg18)		NC_000006.10	Chr6	79,019,608	79,025,784	79,091,904	79,095,953
nssv14248177	Submitted genomic		NC_000006.10:g.(79 019608_79025784)_( 79091904_79095953) del	NCBI36 (hg18)		NC_000006.10	Chr6	79,019,608	79,025,784	79,091,904	79,095,953
nssv14248713	Submitted genomic		NC_000006.10:g.(79 019608_79025784)_( 79091904_79095953) del	NCBI36 (hg18)		NC_000006.10	Chr6	79,019,608	79,025,784	79,091,904	79,095,953
nssv14249037	Submitted genomic		NC_000006.10:g.(79 019608_79025784)_( 79091904_79095953) del	NCBI36 (hg18)		NC_000006.10	Chr6	79,019,608	79,025,784	79,091,904	79,095,953
nssv14249488	Submitted genomic		NC_000006.10:g.(79 019608_79025784)_( 79091904_79095953) del	NCBI36 (hg18)		NC_000006.10	Chr6	79,019,608	79,025,784	79,091,904	79,095,953
nssv14249533	Submitted genomic		NC_000006.10:g.(79 019608_79025784)_( 79091904_79095953) del	NCBI36 (hg18)		NC_000006.10	Chr6	79,019,608	79,025,784	79,091,904	79,095,953
nssv14249772	Submitted genomic		NC_000006.10:g.(79 019608_79025784)_( 79091904_79095953) del	NCBI36 (hg18)		NC_000006.10	Chr6	79,019,608	79,025,784	79,091,904	79,095,953
nssv14250237	Submitted genomic		NC_000006.10:g.(79 019608_79025784)_( 79091904_79095953) del	NCBI36 (hg18)		NC_000006.10	Chr6	79,019,608	79,025,784	79,091,904	79,095,953
nssv14250564	Submitted genomic		NC_000006.10:g.(79 019608_79025784)_( 79091904_79095953) del	NCBI36 (hg18)		NC_000006.10	Chr6	79,019,608	79,025,784	79,091,904	79,095,953
nssv14250660	Submitted genomic		NC_000006.10:g.(79 019608_79025784)_( 79091904_79095953) del	NCBI36 (hg18)		NC_000006.10	Chr6	79,019,608	79,025,784	79,091,904	79,095,953
nssv14251214	Submitted genomic		NC_000006.10:g.(79 019608_79025784)_( 79091904_79095953) del	NCBI36 (hg18)		NC_000006.10	Chr6	79,019,608	79,025,784	79,091,904	79,095,953
nssv14251692	Submitted genomic		NC_000006.10:g.(79 019608_79025784)_( 79091904_79095953) del	NCBI36 (hg18)		NC_000006.10	Chr6	79,019,608	79,025,784	79,091,904	79,095,953
nssv14252127	Submitted genomic		NC_000006.10:g.(79 019608_79025784)_( 79091904_79095953) del	NCBI36 (hg18)		NC_000006.10	Chr6	79,019,608	79,025,784	79,091,904	79,095,953
nssv14241114	Submitted genomic		NC_000006.10:g.(79 019608_79025784)_( 79098528_79102485) del	NCBI36 (hg18)		NC_000006.10	Chr6	79,019,608	79,025,784	79,098,528	79,102,485

dbVar

Database of genomic structural variation

nsv3169614

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant