nsv3169862
- Organism: Homo sapiens
- Study:nstd156 (Fu et al. 2018)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:13,752
- Publication(s):Fu et al. 2018
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 150 SVs from 36 studies. See in: genome view
Overlapping variant regions from other studies: 150 SVs from 36 studies. See in: genome view
Overlapping variant regions from other studies: 40 SVs from 11 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv3169862 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 26,005,233 | 26,008,032 | 26,016,943 | 26,018,984 |
| nsv3169862 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 26,005,461 | 26,008,260 | 26,017,171 | 26,019,212 |
| nsv3169862 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000006.10 | Chr6 | 26,113,440 | 26,116,239 | 26,125,150 | 26,127,191 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv14247191 | duplication | NGO_24 | SNP array | SNP genotyping analysis | 4 | 155 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv14247191 | Remapped | Perfect | NC_000006.12:g.(26 005233_26008032)_( 26016943_26018984) dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 26,005,233 | 26,008,032 | 26,016,943 | 26,018,984 |
| nssv14247191 | Remapped | Perfect | NC_000006.11:g.(26 005461_26008260)_( 26017171_26019212) dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 26,005,461 | 26,008,260 | 26,017,171 | 26,019,212 |
| nssv14247191 | Submitted genomic | NC_000006.10:g.(26 113440_26116239)_( 26125150_26127191) dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 26,113,440 | 26,116,239 | 26,125,150 | 26,127,191 |