nsv3170118
- Organism: Homo sapiens
- Study:nstd156 (Fu et al. 2018)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:5
- Validation:Not tested
- Clinical Assertions: No
- Region Size:383,837
- Publication(s):Fu et al. 2018
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1165 SVs from 73 studies. See in: genome view
Overlapping variant regions from other studies: 1165 SVs from 73 studies. See in: genome view
Overlapping variant regions from other studies: 340 SVs from 21 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv3170118 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 115,290,107 | 115,292,258 | 115,663,627 | 115,673,943 |
| nsv3170118 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 116,211,263 | 116,213,414 | 116,584,783 | 116,595,099 |
| nsv3170118 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000004.10 | Chr4 | 116,430,712 | 116,432,863 | 116,804,232 | 116,814,548 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv14249643 | deletion | NGO_34 | SNP array | SNP genotyping analysis | 1 | 122 |
| nssv14243301 | deletion | NGO_14 | SNP array | SNP genotyping analysis | 1 | 129 |
| nssv14246551 | deletion | NGO_16 | SNP array | SNP genotyping analysis | 1 | 117 |
| nssv14247546 | deletion | NGO_15 | SNP array | SNP genotyping analysis | 1 | 124 |
| nssv14252301 | deletion | NGO_19 | SNP array | SNP genotyping analysis | 1 | 107 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv14249643 | Remapped | Perfect | NC_000004.12:g.(11 5290107_115292258) _(115663627_115673 943)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 115,290,107 | 115,292,258 | 115,663,627 | 115,673,943 |
| nssv14243301 | Remapped | Perfect | NC_000004.12:g.(11 5294079_115296445) _(115663627_115673 943)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 115,294,079 | 115,296,445 | 115,663,627 | 115,673,943 |
| nssv14246551 | Remapped | Perfect | NC_000004.12:g.(11 5294079_115296445) _(115663627_115673 943)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 115,294,079 | 115,296,445 | 115,663,627 | 115,673,943 |
| nssv14247546 | Remapped | Perfect | NC_000004.12:g.(11 5294079_115296445) _(115663627_115673 943)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 115,294,079 | 115,296,445 | 115,663,627 | 115,673,943 |
| nssv14252301 | Remapped | Perfect | NC_000004.12:g.(11 5294079_115296445) _(115663627_115673 943)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 115,294,079 | 115,296,445 | 115,663,627 | 115,673,943 |
| nssv14249643 | Remapped | Perfect | NC_000004.11:g.(11 6211263_116213414) _(116584783_116595 099)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 116,211,263 | 116,213,414 | 116,584,783 | 116,595,099 |
| nssv14243301 | Remapped | Perfect | NC_000004.11:g.(11 6215235_116217601) _(116584783_116595 099)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 116,215,235 | 116,217,601 | 116,584,783 | 116,595,099 |
| nssv14246551 | Remapped | Perfect | NC_000004.11:g.(11 6215235_116217601) _(116584783_116595 099)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 116,215,235 | 116,217,601 | 116,584,783 | 116,595,099 |
| nssv14247546 | Remapped | Perfect | NC_000004.11:g.(11 6215235_116217601) _(116584783_116595 099)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 116,215,235 | 116,217,601 | 116,584,783 | 116,595,099 |
| nssv14252301 | Remapped | Perfect | NC_000004.11:g.(11 6215235_116217601) _(116584783_116595 099)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 116,215,235 | 116,217,601 | 116,584,783 | 116,595,099 |
| nssv14249643 | Submitted genomic | NC_000004.10:g.(11 6430712_116432863) _(116804232_116814 548)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 116,430,712 | 116,432,863 | 116,804,232 | 116,814,548 | ||
| nssv14243301 | Submitted genomic | NC_000004.10:g.(11 6434684_116437050) _(116804232_116814 548)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 116,434,684 | 116,437,050 | 116,804,232 | 116,814,548 | ||
| nssv14246551 | Submitted genomic | NC_000004.10:g.(11 6434684_116437050) _(116804232_116814 548)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 116,434,684 | 116,437,050 | 116,804,232 | 116,814,548 | ||
| nssv14247546 | Submitted genomic | NC_000004.10:g.(11 6434684_116437050) _(116804232_116814 548)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 116,434,684 | 116,437,050 | 116,804,232 | 116,814,548 | ||
| nssv14252301 | Submitted genomic | NC_000004.10:g.(11 6434684_116437050) _(116804232_116814 548)del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 116,434,684 | 116,437,050 | 116,804,232 | 116,814,548 |