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dbVar

Database of genomic structural variation

nsv3170136

Organism: Homo sapiens

Study:nstd156 (Fu et al. 2018)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:45,722

Publication(s):Fu et al. 2018

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 851 SVs from 86 studies. See in: genome view

Remapped(Score: Perfect):34,777,382-34,823,103

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv3170136	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	34,777,382	34,777,403	34,822,561	34,823,103
nsv3170136	Remapped	Perfect	GRCh38.p12	ALT_REF_LOCI_1	Second Pass	NW_003315915.1	Chr4\|NW_00 3315915.1	269,711	269,732	314,890	315,432
nsv3170136	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000004.11	Chr4	34,779,004	34,779,025	34,824,183	34,824,725
nsv3170136	Remapped	Perfect	GRCh37.p13	PATCHES	Second Pass	NW_003315915.1	Chr4\|NW_00 3315915.1	269,711	269,732	314,890	315,432
nsv3170136	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000004.10	Chr4	34,455,399	34,455,420	34,500,578	34,501,120

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv14245290	deletion	PML_2	SNP array	SNP genotyping analysis	1	148
nssv14249174	deletion	MLY_16	SNP array	SNP genotyping analysis	1	117
nssv14251073	deletion	NGO_36	SNP array	SNP genotyping analysis	1	128

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv14245290	Remapped	Perfect	NW_003315915.1:g.( 269711_269732)_(31 4890_315432)del	GRCh38.p12	Second Pass	NW_003315915.1	Chr4\|NW_00 3315915.1	269,711	269,732	314,890	315,432
nssv14249174	Remapped	Perfect	NW_003315915.1:g.( 269711_269732)_(31 4890_315432)del	GRCh38.p12	Second Pass	NW_003315915.1	Chr4\|NW_00 3315915.1	269,711	269,732	314,890	315,432
nssv14251073	Remapped	Perfect	NW_003315915.1:g.( 269711_269732)_(31 4890_315432)del	GRCh38.p12	Second Pass	NW_003315915.1	Chr4\|NW_00 3315915.1	269,711	269,732	314,890	315,432
nssv14245290	Remapped	Perfect	NC_000004.12:g.(34 777382_34777403)_( 34822561_34823103) del	GRCh38.p12	First Pass	NC_000004.12	Chr4	34,777,382	34,777,403	34,822,561	34,823,103
nssv14249174	Remapped	Perfect	NC_000004.12:g.(34 777382_34777403)_( 34822561_34823103) del	GRCh38.p12	First Pass	NC_000004.12	Chr4	34,777,382	34,777,403	34,822,561	34,823,103
nssv14251073	Remapped	Perfect	NC_000004.12:g.(34 777382_34777403)_( 34822561_34823103) del	GRCh38.p12	First Pass	NC_000004.12	Chr4	34,777,382	34,777,403	34,822,561	34,823,103
nssv14245290	Remapped	Perfect	NW_003315915.1:g.( 269711_269732)_(31 4890_315432)del	GRCh37.p13	Second Pass	NW_003315915.1	Chr4\|NW_00 3315915.1	269,711	269,732	314,890	315,432
nssv14249174	Remapped	Perfect	NW_003315915.1:g.( 269711_269732)_(31 4890_315432)del	GRCh37.p13	Second Pass	NW_003315915.1	Chr4\|NW_00 3315915.1	269,711	269,732	314,890	315,432
nssv14251073	Remapped	Perfect	NW_003315915.1:g.( 269711_269732)_(31 4890_315432)del	GRCh37.p13	Second Pass	NW_003315915.1	Chr4\|NW_00 3315915.1	269,711	269,732	314,890	315,432
nssv14245290	Remapped	Perfect	NC_000004.11:g.(34 779004_34779025)_( 34824183_34824725) del	GRCh37.p13	First Pass	NC_000004.11	Chr4	34,779,004	34,779,025	34,824,183	34,824,725
nssv14249174	Remapped	Perfect	NC_000004.11:g.(34 779004_34779025)_( 34824183_34824725) del	GRCh37.p13	First Pass	NC_000004.11	Chr4	34,779,004	34,779,025	34,824,183	34,824,725
nssv14251073	Remapped	Perfect	NC_000004.11:g.(34 779004_34779025)_( 34824183_34824725) del	GRCh37.p13	First Pass	NC_000004.11	Chr4	34,779,004	34,779,025	34,824,183	34,824,725
nssv14245290	Submitted genomic		NC_000004.10:g.(34 455399_34455420)_( 34500578_34501120) del	NCBI36 (hg18)		NC_000004.10	Chr4	34,455,399	34,455,420	34,500,578	34,501,120
nssv14249174	Submitted genomic		NC_000004.10:g.(34 455399_34455420)_( 34500578_34501120) del	NCBI36 (hg18)		NC_000004.10	Chr4	34,455,399	34,455,420	34,500,578	34,501,120
nssv14251073	Submitted genomic		NC_000004.10:g.(34 455399_34455420)_( 34500578_34501120) del	NCBI36 (hg18)		NC_000004.10	Chr4	34,455,399	34,455,420	34,500,578	34,501,120

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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