nsv3170144
- Organism: Homo sapiens
- Study:nstd156 (Fu et al. 2018)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:409,457
- Publication(s):Fu et al. 2018
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1105 SVs from 79 studies. See in: genome view
Overlapping variant regions from other studies: 1106 SVs from 79 studies. See in: genome view
Overlapping variant regions from other studies: 284 SVs from 23 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv3170144 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 93,238,507 | 93,245,637 | 93,644,800 | 93,647,963 |
| nsv3170144 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 94,159,658 | 94,166,788 | 94,565,951 | 94,569,114 |
| nsv3170144 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000004.10 | Chr4 | 94,378,681 | 94,385,811 | 94,784,974 | 94,788,137 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv14242751 | deletion | NGO_28 | SNP array | SNP genotyping analysis | 1 | 139 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv14242751 | Remapped | Perfect | NC_000004.12:g.(93 238507_93245637)_( 93644800_93647963) del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 93,238,507 | 93,245,637 | 93,644,800 | 93,647,963 |
| nssv14242751 | Remapped | Perfect | NC_000004.11:g.(94 159658_94166788)_( 94565951_94569114) del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 94,159,658 | 94,166,788 | 94,565,951 | 94,569,114 |
| nssv14242751 | Submitted genomic | NC_000004.10:g.(94 378681_94385811)_( 94784974_94788137) del | NCBI36 (hg18) | NC_000004.10 | Chr4 | 94,378,681 | 94,385,811 | 94,784,974 | 94,788,137 |