nsv3170153
- Organism: Homo sapiens
- Study:nstd156 (Fu et al. 2018)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:84,289
- Publication(s):Fu et al. 2018
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 299 SVs from 52 studies. See in: genome view
Overlapping variant regions from other studies: 299 SVs from 52 studies. See in: genome view
Overlapping variant regions from other studies: 78 SVs from 14 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv3170153 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000007.14 | Chr7 | 37,691,941 | 37,700,299 | 37,772,775 | 37,776,229 |
| nsv3170153 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000007.13 | Chr7 | 37,731,543 | 37,739,901 | 37,812,377 | 37,815,831 |
| nsv3170153 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000007.12 | Chr7 | 37,698,068 | 37,706,426 | 37,778,902 | 37,782,356 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv14242800 | deletion | MLY_15 | SNP array | SNP genotyping analysis | 1 | 146 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv14242800 | Remapped | Perfect | NC_000007.14:g.(37 691941_37700299)_( 37772775_37776229) del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 37,691,941 | 37,700,299 | 37,772,775 | 37,776,229 |
| nssv14242800 | Remapped | Perfect | NC_000007.13:g.(37 731543_37739901)_( 37812377_37815831) del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 37,731,543 | 37,739,901 | 37,812,377 | 37,815,831 |
| nssv14242800 | Submitted genomic | NC_000007.12:g.(37 698068_37706426)_( 37778902_37782356) del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 37,698,068 | 37,706,426 | 37,778,902 | 37,782,356 |