nsv3170234
- Organism: Homo sapiens
- Study:nstd156 (Fu et al. 2018)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:13
- Validation:Not tested
- Clinical Assertions: No
- Region Size:10,900
- Publication(s):Fu et al. 2018
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 371 SVs from 64 studies. See in: genome view
Overlapping variant regions from other studies: 377 SVs from 65 studies. See in: genome view
Overlapping variant regions from other studies: 152 SVs from 24 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv3170234 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 28,044,706 | 28,047,590 | 28,050,693 | 28,055,605 |
| nsv3170234 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 28,044,704 | 28,047,588 | 28,050,691 | 28,055,603 |
| nsv3170234 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000009.10 | Chr9 | 28,034,704 | 28,037,588 | 28,040,691 | 28,045,603 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv14243538 | deletion | SNI_7 | SNP array | SNP genotyping analysis | 1 | 128 |
| nssv14243564 | deletion | NGO_35 | SNP array | SNP genotyping analysis | 1 | 111 |
| nssv14244329 | deletion | MLY_6 | SNP array | SNP genotyping analysis | 1 | 132 |
| nssv14244611 | deletion | NGO_22 | SNP array | SNP genotyping analysis | 1 | 126 |
| nssv14245082 | deletion | SNI_9 | SNP array | SNP genotyping analysis | 0 | 128 |
| nssv14247243 | deletion | NGO_23 | SNP array | SNP genotyping analysis | 1 | 127 |
| nssv14247934 | deletion | NGO_31 | SNP array | SNP genotyping analysis | 0 | 121 |
| nssv14249699 | deletion | NGO_12 | SNP array | SNP genotyping analysis | 1 | 117 |
| nssv14250199 | deletion | NGO_52 | SNP array | SNP genotyping analysis | 1 | 123 |
| nssv14250518 | deletion | SNI_11 | SNP array | SNP genotyping analysis | 1 | 129 |
| nssv14250893 | deletion | NGO_11 | SNP array | SNP genotyping analysis | 1 | 131 |
| nssv14251970 | deletion | SNI_14 | SNP array | SNP genotyping analysis | 1 | 136 |
| nssv14252482 | duplication | NGO_6 | SNP array | SNP genotyping analysis | 3 | 141 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv14243538 | Remapped | Perfect | NC_000009.12:g.(28 044706_28047590)_( 28050693_28055605) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 28,044,706 | 28,047,590 | 28,050,693 | 28,055,605 |
| nssv14243564 | Remapped | Perfect | NC_000009.12:g.(28 044706_28047590)_( 28050693_28055605) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 28,044,706 | 28,047,590 | 28,050,693 | 28,055,605 |
| nssv14244329 | Remapped | Perfect | NC_000009.12:g.(28 044706_28047590)_( 28050693_28055605) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 28,044,706 | 28,047,590 | 28,050,693 | 28,055,605 |
| nssv14244611 | Remapped | Perfect | NC_000009.12:g.(28 044706_28047590)_( 28050693_28055605) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 28,044,706 | 28,047,590 | 28,050,693 | 28,055,605 |
| nssv14245082 | Remapped | Perfect | NC_000009.12:g.(28 044706_28047590)_( 28050693_28055605) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 28,044,706 | 28,047,590 | 28,050,693 | 28,055,605 |
| nssv14247243 | Remapped | Perfect | NC_000009.12:g.(28 044706_28047590)_( 28050693_28055605) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 28,044,706 | 28,047,590 | 28,050,693 | 28,055,605 |
| nssv14247934 | Remapped | Perfect | NC_000009.12:g.(28 044706_28047590)_( 28050693_28055605) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 28,044,706 | 28,047,590 | 28,050,693 | 28,055,605 |
| nssv14249699 | Remapped | Perfect | NC_000009.12:g.(28 044706_28047590)_( 28050693_28055605) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 28,044,706 | 28,047,590 | 28,050,693 | 28,055,605 |
| nssv14250199 | Remapped | Perfect | NC_000009.12:g.(28 044706_28047590)_( 28050693_28055605) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 28,044,706 | 28,047,590 | 28,050,693 | 28,055,605 |
| nssv14250518 | Remapped | Perfect | NC_000009.12:g.(28 044706_28047590)_( 28050693_28055605) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 28,044,706 | 28,047,590 | 28,050,693 | 28,055,605 |
| nssv14250893 | Remapped | Perfect | NC_000009.12:g.(28 044706_28047590)_( 28050693_28055605) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 28,044,706 | 28,047,590 | 28,050,693 | 28,055,605 |
| nssv14251970 | Remapped | Perfect | NC_000009.12:g.(28 044706_28047590)_( 28050693_28055605) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 28,044,706 | 28,047,590 | 28,050,693 | 28,055,605 |
| nssv14252482 | Remapped | Perfect | NC_000009.12:g.(28 044706_28047590)_( 28050693_28055605) dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 28,044,706 | 28,047,590 | 28,050,693 | 28,055,605 |
| nssv14243538 | Remapped | Perfect | NC_000009.11:g.(28 044704_28047588)_( 28050691_28055603) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 28,044,704 | 28,047,588 | 28,050,691 | 28,055,603 |
| nssv14243564 | Remapped | Perfect | NC_000009.11:g.(28 044704_28047588)_( 28050691_28055603) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 28,044,704 | 28,047,588 | 28,050,691 | 28,055,603 |
| nssv14244329 | Remapped | Perfect | NC_000009.11:g.(28 044704_28047588)_( 28050691_28055603) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 28,044,704 | 28,047,588 | 28,050,691 | 28,055,603 |
| nssv14244611 | Remapped | Perfect | NC_000009.11:g.(28 044704_28047588)_( 28050691_28055603) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 28,044,704 | 28,047,588 | 28,050,691 | 28,055,603 |
| nssv14245082 | Remapped | Perfect | NC_000009.11:g.(28 044704_28047588)_( 28050691_28055603) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 28,044,704 | 28,047,588 | 28,050,691 | 28,055,603 |
| nssv14247243 | Remapped | Perfect | NC_000009.11:g.(28 044704_28047588)_( 28050691_28055603) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 28,044,704 | 28,047,588 | 28,050,691 | 28,055,603 |
| nssv14247934 | Remapped | Perfect | NC_000009.11:g.(28 044704_28047588)_( 28050691_28055603) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 28,044,704 | 28,047,588 | 28,050,691 | 28,055,603 |
| nssv14249699 | Remapped | Perfect | NC_000009.11:g.(28 044704_28047588)_( 28050691_28055603) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 28,044,704 | 28,047,588 | 28,050,691 | 28,055,603 |
| nssv14250199 | Remapped | Perfect | NC_000009.11:g.(28 044704_28047588)_( 28050691_28055603) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 28,044,704 | 28,047,588 | 28,050,691 | 28,055,603 |
| nssv14250518 | Remapped | Perfect | NC_000009.11:g.(28 044704_28047588)_( 28050691_28055603) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 28,044,704 | 28,047,588 | 28,050,691 | 28,055,603 |
| nssv14250893 | Remapped | Perfect | NC_000009.11:g.(28 044704_28047588)_( 28050691_28055603) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 28,044,704 | 28,047,588 | 28,050,691 | 28,055,603 |
| nssv14251970 | Remapped | Perfect | NC_000009.11:g.(28 044704_28047588)_( 28050691_28055603) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 28,044,704 | 28,047,588 | 28,050,691 | 28,055,603 |
| nssv14252482 | Remapped | Perfect | NC_000009.11:g.(28 044704_28047588)_( 28050691_28055603) dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 28,044,704 | 28,047,588 | 28,050,691 | 28,055,603 |
| nssv14243538 | Submitted genomic | NC_000009.10:g.(28 034704_28037588)_( 28040691_28045603) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 28,034,704 | 28,037,588 | 28,040,691 | 28,045,603 | ||
| nssv14243564 | Submitted genomic | NC_000009.10:g.(28 034704_28037588)_( 28040691_28045603) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 28,034,704 | 28,037,588 | 28,040,691 | 28,045,603 | ||
| nssv14244329 | Submitted genomic | NC_000009.10:g.(28 034704_28037588)_( 28040691_28045603) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 28,034,704 | 28,037,588 | 28,040,691 | 28,045,603 | ||
| nssv14244611 | Submitted genomic | NC_000009.10:g.(28 034704_28037588)_( 28040691_28045603) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 28,034,704 | 28,037,588 | 28,040,691 | 28,045,603 | ||
| nssv14245082 | Submitted genomic | NC_000009.10:g.(28 034704_28037588)_( 28040691_28045603) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 28,034,704 | 28,037,588 | 28,040,691 | 28,045,603 | ||
| nssv14247243 | Submitted genomic | NC_000009.10:g.(28 034704_28037588)_( 28040691_28045603) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 28,034,704 | 28,037,588 | 28,040,691 | 28,045,603 | ||
| nssv14247934 | Submitted genomic | NC_000009.10:g.(28 034704_28037588)_( 28040691_28045603) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 28,034,704 | 28,037,588 | 28,040,691 | 28,045,603 | ||
| nssv14249699 | Submitted genomic | NC_000009.10:g.(28 034704_28037588)_( 28040691_28045603) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 28,034,704 | 28,037,588 | 28,040,691 | 28,045,603 | ||
| nssv14250199 | Submitted genomic | NC_000009.10:g.(28 034704_28037588)_( 28040691_28045603) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 28,034,704 | 28,037,588 | 28,040,691 | 28,045,603 | ||
| nssv14250518 | Submitted genomic | NC_000009.10:g.(28 034704_28037588)_( 28040691_28045603) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 28,034,704 | 28,037,588 | 28,040,691 | 28,045,603 | ||
| nssv14250893 | Submitted genomic | NC_000009.10:g.(28 034704_28037588)_( 28040691_28045603) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 28,034,704 | 28,037,588 | 28,040,691 | 28,045,603 | ||
| nssv14251970 | Submitted genomic | NC_000009.10:g.(28 034704_28037588)_( 28040691_28045603) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 28,034,704 | 28,037,588 | 28,040,691 | 28,045,603 | ||
| nssv14252482 | Submitted genomic | NC_000009.10:g.(28 034704_28037588)_( 28040691_28045603) dup | NCBI36 (hg18) | NC_000009.10 | Chr9 | 28,034,704 | 28,037,588 | 28,040,691 | 28,045,603 |